PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0807s0009.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 374aa    MW: 41476.9 Da    PI: 6.4955
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0807s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.31.2e-134871326
                         S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                          e C+f++rtG Ck+G++CkF+H+
  Cagra.0807s0009.1.p 48 AEDCSFYMRTGSCKFGSSCKFNHP 71
                         689********************9 PP
2zf-CCCH32.21.8e-1098118525
                          --SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                           C++++rtG CkyG++C+F+H
  Cagra.0807s0009.1.p  98 DCKYYFRTGGCKYGESCRFNH 118
                          5******************** PP
3zf-CCCH40.35.4e-13142165326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          +++C++++r+G Ck+G+ CkF+H+
  Cagra.0807s0009.1.p 142 EVECPYYMRNGSCKFGAECKFNHP 165
                          789********************9 PP
4zf-CCCH17.76.2e-06273298227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+++ +tG Ck+  +Ck++H++
  Cagra.0807s0009.1.p 273 DQPECSYYIKTGDCKFKFNCKYHHPK 298
                          689*********************96 PP
5zf-CCCH33.28.6e-11320343326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          + +C +++r+G+Ck+G+ C+F H+
  Cagra.0807s0009.1.p 320 QNICTHYSRYGICKFGPACRFDHS 343
                          679********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.4324573IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-74572IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-64573IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-114871IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-55170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.62993121IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-493120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-596121IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-898118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-699120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.887139167IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-7139166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5142166IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10142165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4145164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.718271299IPR000571Zinc finger, CCCH-type
SMARTSM003561271298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5275301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6315343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502317345IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-4317344IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-8320343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4322344IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
GLDSNAVVTN QEQEEDGDGY GCVYGDGDGW SENESEENEA VYPVRPGAED CSFYMRTGSC  60
KFGSSCKFNH PLSRKIQIAR DNKVREKEED GDKLRLIDCK YYFRTGGCKY GESCRFNHTK  120
SKSCLASVPE LNFLGLPIRL GEVECPYYMR NGSCKFGAEC KFNHPDPTTI GGTDSPSFHS  180
NNGVSAGSFS PKSTFQASSA SWSSPRHANG STPFIPVMLS QTHGVPSQTP EWNGYQVASV  240
YSSERGVFSS SNISMLSQYH HQMPAEEFPE RPDQPECSYY IKTGDCKFKF NCKYHHPKNR  300
LPKLPPYALN DKGLPLRPDQ NICTHYSRYG ICKFGPACRF DHSAQLPYPT GNSQTIVEPP  360
QVGANGDEVD GWN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0807s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0331390.0BT033139.1 Arabidopsis thaliana unknown protein (At3g48440) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638333.10.0zinc finger CCCH domain-containing protein 43 isoform X1
SwissprotQ9STM40.0C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLR0FNK50.0R0FNK5_9BRAS; Uncharacterized protein
STRINGCagra.0807s0009.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]