PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0802s0009.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 311aa    MW: 35284.1 Da    PI: 9.8001
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0802s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573101.85.9e-32120210298
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                          + qrlwseeDei +LqG+idfk+ktgk +++d  +fyef+k+sis++vs sq +eKi+  K+Kf +k+kk   gk+    ++h+ k+fel
  Cagra.0802s0009.1.p 120 NNQRLWSEEDEIRVLQGIIDFKSKTGKRATEDKRGFYEFIKDSISVEVSLSQCIEKIKTVKRKFMNKRKK---GKK---PEAHNLKSFEL 203
                          579******************************************************************9...555...6789999**** PP

               DUF573  92 skkiWgs 98 
                          s++iWgs
  Cagra.0802s0009.1.p 204 SEMIWGS 210
                          *****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-24122209IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MTTKHLRLRP WEPSSSDSVS FEEEEVELTM HEKPQSPSAS DVAAATAKTT KASSEKEDKK  60
KKTVSAASLV AEAKTKKTKK AKKKEVCVSG EAKKRASEEE TSTKDVSAAK RAKKDVKKPN  120
NQRLWSEEDE IRVLQGIIDF KSKTGKRATE DKRGFYEFIK DSISVEVSLS QCIEKIKTVK  180
RKFMNKRKKG KKPEAHNLKS FELSEMIWGS DDADESRKNE MLKRPEEEEG KDVVILEQIQ  240
DWFNNSFLFR QVASFGVDED SLKRRWSSVD AEKKKMVEDK LRVLQTNELG LVSQKTELLY  300
EVASLIAEGN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0802s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299953.20.0probable transcription factor At1g61730
TrEMBLR0GB851e-169R0GB85_9BRAS; Uncharacterized protein
STRINGCagra.0802s0009.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.12e-42DNA-binding storekeeper protein-related transcriptional regulator