PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0799s0114.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 341aa MW: 38460.3 Da PI: 6.7413 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.3 | 1.3e-52 | 22 | 150 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL+ k+ + l +i+evd++++ePw+Lp+++k +ekewyf+s rd+ky+tg r+nrat++gyWkatgkdk Cagra.0799s0114.1.p 22 LPPGFRFHPTDEELITFYLASKIFHGGLCG-IHISEVDLNRCEPWELPEMAKMGEKEWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDK 110 79*************************877.78***************988999************************************ PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 ev++ +g lvg+kktLvfykgrap+g kt+Wvmheyrle Cagra.0799s0114.1.p 111 EVFAGgGGPLVGMKKTLVFYKGRAPRGLKTKWVMHEYRLE 150 ****866677****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-62 | 17 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.576 | 22 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-26 | 23 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MMLAVEDVLS ELAGEEKNER GLPPGFRFHP TDEELITFYL ASKIFHGGLC GIHISEVDLN 60 RCEPWELPEM AKMGEKEWYF YSLRDRKYPT GLRTNRATTA GYWKATGKDK EVFAGGGGPL 120 VGMKKTLVFY KGRAPRGLKT KWVMHEYRLE TDLSHRHTCK EEWVICRVFN KTGDRKNVGI 180 HNQISYLHNH SLSTAHHHHH HHNHHHEALP LLLEPSNKTL NNFPSLLYED THQTYNNSLL 240 NGSSGHNLDE LKALINPVVS QLNGIIFSPG NNKEEDEFGF NLGVKTEPSS NGGNNNELDV 300 RDYLENPLFQ EASYGLLGLS SSPGPLHMLL DSPCPLGFQL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-49 | 15 | 171 | 8 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00241 | DAP | Transfer from AT1G76420 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0799s0114.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006301620.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3 | ||||
Swissprot | Q9S851 | 0.0 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | R0ID00 | 0.0 | R0ID00_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0799s0114.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 1e-176 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0799s0114.1.p |
Publications ? help Back to Top | |||
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