PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0799s0103.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

FAR1

Protein Properties

Length: 724aa MW: 83924.1 Da PI: 7.0695

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0799s0103.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84	2.3e-26	12	97	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++ra+ ++gCka+++vk++ dgkw+v+++ +eHnHel p Cagra.0799s0103.1.p 12 FYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDA----INPRASPKIGCKASMHVKRRPDGKWYVYSFIKEHNHELLP 97 9**************************************99887....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-24	12	97	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-27	212	304	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.484	490	526	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.4E-9	491	524	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-8	501	528	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence Send to blast
MEFETHEDAY LFYKDYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP 60 RASPKIGCKA SMHVKRRPDG KWYVYSFIKE HNHELLPEQA HFFRSHRNTE PVKSTDARLR 120 RKKNSPLTDC KHLSAYNDLD FIDGYMRNQH DKGRRLVLHD GDAQILLEFL MRMQEENPNF 180 FFAVDFSEDH LLRNVFWVDA KGIQDYKSFS DVVSFDTTYF LSKYKIPLVL FIGVNHHVQP 240 VLLGCGLLAD DTVYTYVWLM QSWLVAMGGQ KPKVMLTDQN NAIKAAIAAV LPETSHCYCL 300 WHVLDRLPMN LDYWSMWQDT FMKKFFKCIY RSWSEEEFDR RWLKLIDKFN LRDVQWMRSL 360 YEDRKFWAPT FMRGVSFAGL STRYRSESVN SLFDRYLQVE TSLKEFLEGY GLMLEDMYEE 420 EAKADFDAWH EAPELKSPSP FEKQVLLVYT HEIFRKFQLE VLGAAACHLT KESEEGTTYS 480 VKDFDDDQKY LVDWNEFKSD IYCSCRSFEY KGYLCRHAIV VLQMSGVFTI PINYVLQRWT 540 NAARNRHQIS GNLELVQSNI RRFNDLCRRA IILGEEGSLS QESYDIAMFA MKEAFKQCAI 600 KCNTIEHPAR CDEAAIQVGA VQEGNQYGST LKQVEFEPNI LAGNAPVQAE TRKEKRSSLN 660 NTSKKSKHMA QSETVGEGSQ EGFQHVAVSG QFHNTMPGIF QNAISTEFHN FAATNMHQNH 720 PPG*

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence Send to blast

MEFETHEDAY LFYKDYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP  60
RASPKIGCKA SMHVKRRPDG KWYVYSFIKE HNHELLPEQA HFFRSHRNTE PVKSTDARLR  120
RKKNSPLTDC KHLSAYNDLD FIDGYMRNQH DKGRRLVLHD GDAQILLEFL MRMQEENPNF  180
FFAVDFSEDH LLRNVFWVDA KGIQDYKSFS DVVSFDTTYF LSKYKIPLVL FIGVNHHVQP  240
VLLGCGLLAD DTVYTYVWLM QSWLVAMGGQ KPKVMLTDQN NAIKAAIAAV LPETSHCYCL  300
WHVLDRLPMN LDYWSMWQDT FMKKFFKCIY RSWSEEEFDR RWLKLIDKFN LRDVQWMRSL  360
YEDRKFWAPT FMRGVSFAGL STRYRSESVN SLFDRYLQVE TSLKEFLEGY GLMLEDMYEE  420
EAKADFDAWH EAPELKSPSP FEKQVLLVYT HEIFRKFQLE VLGAAACHLT KESEEGTTYS  480
VKDFDDDQKY LVDWNEFKSD IYCSCRSFEY KGYLCRHAIV VLQMSGVFTI PINYVLQRWT  540
NAARNRHQIS GNLELVQSNI RRFNDLCRRA IILGEEGSLS QESYDIAMFA MKEAFKQCAI  600
KCNTIEHPAR CDEAAIQVGA VQEGNQYGST LKQVEFEPNI LAGNAPVQAE TRKEKRSSLN  660
NTSKKSKHMA QSETVGEGSQ EGFQHVAVSG QFHNTMPGIF QNAISTEFHN FAATNMHQNH  720
PPG*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0799s0103.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK221406	0.0	AK221406.1 Arabidopsis thaliana mRNA for putative phytochrome A signaling protein, complete cds, clone: RAFL25-49-E06.
GenBank	BT010456	0.0	BT010456.1 Arabidopsis thaliana far-red impaired response protein -related (At1g76320) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006300792.1	0.0	protein FAR1-RELATED SEQUENCE 4
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	R0I6J3	0.0	R0I6J3_9BRAS; Uncharacterized protein
STRING	Cagra.0799s0103.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	Cagra.0799s0103.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]