PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0799s0015.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TALE | ||||||||
Protein Properties | Length: 523aa MW: 59601.9 Da PI: 6.6662 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.8 | 1.1e-09 | 366 | 403 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ L+k++gL+++qV +WF N R + Cagra.0799s0015.1.p 366 FEHflHPYPKESEKIMLSKQTGLSKNQVANWFINARVR 403 665559******************************88 PP | |||||||
2 | BELL | 125.4 | 2.2e-40 | 229 | 300 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk+kLl++++eVdkrY+qy++q+++++ssFe+v+glg+akpYts+Al++iSrhFrcL+dai+eqi Cagra.0799s0015.1.p 229 ERQELQNKKSKLLTMVDEVDKRYNQYHHQMEALASSFEMVTGLGAAKPYTSVALNRISRHFRCLRDAIKEQI 300 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.4E-51 | 162 | 298 | IPR006563 | POX domain |
Pfam | PF07526 | 6.2E-48 | 168 | 296 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.066 | 344 | 407 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.00E-11 | 347 | 408 | No hit | No description |
SMART | SM00389 | 1.9E-9 | 347 | 411 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.12E-17 | 348 | 414 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.7E-28 | 350 | 413 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.8E-17 | 364 | 403 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MAVYYPNSVG MQSLYQESIY LNEQQQQQQA SSSSAASFSE IVSGDVRNNN EMVFIPPTSD 60 VAVNGNVTVS SNDLSFHGGG LSLSLGNQIQ SAVSVSPFQY HYQNLSNQLN YSNPNASTMS 120 DENGKSLSGH HHQQHHSDQM IPSSGYNNNG VGFFNNYRYE TSGFVSSVLR SRYLKPTQQL 180 LDEVVSVRKE LKLGNKKMKN DKGQDFQNGS SDNITEDEKS QSQELSPSER QELQNKKSKL 240 LTMVDEVDKR YNQYHHQMEA LASSFEMVTG LGAAKPYTSV ALNRISRHFR CLRDAIKEQI 300 QVIRGKLGER ETSEEQGERI PRLRYLDQRL RQQRALHQQL GMVRPAWRPQ RGLPENSVSI 360 LRAWLFEHFL HPYPKESEKI MLSKQTGLSK NQVANWFINA RVRLWKPMIE EMYKEEFGDS 420 ELLSNSNQEN NKMLETSQLK HEESSSQQQN QGNNNNNMAY RSDAEENLVF ADPKPDRVAT 480 GEYDSLMNYH GFGIDDYNRY VGLGNQQDGR FSNPHQLHDF VV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-15 | 353 | 411 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-15 | 353 | 411 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0799s0015.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF353093 | 0.0 | AF353093.1 Arabidopsis thaliana BEL1-like homeodomain 3 (BLH3) mRNA, complete cds. | |||
GenBank | AY085278 | 0.0 | AY085278.1 Arabidopsis thaliana clone 142443 mRNA, complete sequence. | |||
GenBank | AY598452 | 0.0 | AY598452.1 Arabidopsis thaliana BEL1-like homeodomain 3 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006302135.1 | 0.0 | BEL1-like homeodomain protein 3 | ||||
Swissprot | Q9FWS9 | 0.0 | BLH3_ARATH; BEL1-like homeodomain protein 3 | ||||
TrEMBL | R0IEB0 | 0.0 | R0IEB0_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0799s0015.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3820 | 19 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75410.2 | 0.0 | BEL1-like homeodomain 3 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0799s0015.1.p |
Publications ? help Back to Top | |||
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