PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0769s0020.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 380aa    MW: 41484.2 Da    PI: 8.3021
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0769s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.41.4e-1689175186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W+++ +++Li+a  ++ ++ ++g lk+++W+ev++ +   r+ ++ ++ +qCk++++ ++k+yk++k+   ++  +  s++++f++le
  Cagra.0769s0020.1.p  89 CWSEEATKVLIDAWGDRFSEPGKGTLKQQHWKEVAEIVnksRQCKYPKTDIQCKNRIDTVKKKYKQEKAKVASG--DGPSKWVFFKKLE 175
                          7*************************************99999999**************************98..56668******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-2488177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0048831Biological Processregulation of shoot system development
GO:0005730Cellular Componentnucleolus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEEDDEVQSI PSPGDSSLSP QAPSSPPILP TNDVTVAVVK KPTGAVSSQS PSRNALALVV  60
HTPAVTGGGS GNRNGRGGSG GGGGGRDDCW SEEATKVLID AWGDRFSEPG KGTLKQQHWK  120
EVAEIVNKSR QCKYPKTDIQ CKNRIDTVKK KYKQEKAKVA SGDGPSKWVF FKKLESLIGG  180
TTTIATASKA SEKAPMGVNS RSNLYKRQAK GTQILQHQQQ GGDFKRSSDS MRWHFRKRSA  240
SETESESDPE PEGSPDSAES LPPPQPVSFQ LPKRLKVDKS ECGGSGVGDV ARAILGFTEA  300
YEKAETAKLK LMVELEKERM KFAKEMEMQR MQFLKTQLEI TQSNQEEEER SRQRGERRIV  360
DVDDDDDDRN AKINGDVSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17585RGGSGGGGGGR
2224237KRSSDSMRWHFRKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0769s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3603250.0AF360325.1 Arabidopsis thaliana unknown protein (At1g54060) mRNA, complete cds.
GenBankAY0563330.0AY056333.1 Arabidopsis thaliana unknown protein (At1g54060) mRNA, complete cds.
GenBankAY0847720.0AY084772.1 Arabidopsis thaliana clone 117519 mRNA, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF15I10.0AC006577.2 Sequence of BAC F15I1 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023645080.10.0trihelix transcription factor ASIL1
SwissprotQ9SYG20.0ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBLR0GXB70.0R0GXB7_9BRAS; Uncharacterized protein
STRINGCagra.0769s0020.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89101637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54060.11e-1546B-interacting protein 1-like 1