PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0769s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 359aa MW: 39576.9 Da PI: 4.8178 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.8e-20 | 127 | 176 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp+e +r++lg+f taeeAa+a++aa+++++g Cagra.0769s0008.1.p 127 QYRGIRQRP-WGKWAAEIRDPRE---GARIWLGTFKTAEEAARAYDAAARRIRG 176 69*******.**********965...3*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.15E-18 | 127 | 185 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-32 | 127 | 186 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.395 | 127 | 184 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-22 | 127 | 185 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.4E-38 | 127 | 190 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 128 | 139 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-13 | 128 | 176 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 150 | 166 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NAKGSKKSSK KRSSFFDLDD EFEADFQGFK 60 DDSFVDCDDD FDVGDVFADV KPFVFGATPK PAVSAAATAA EGSTFGKKVA DVVGEAEKSA 120 KRKRKNQYRG IRQRPWGKWA AEIRDPREGA RIWLGTFKTA EEAARAYDAA ARRIRGSKAK 180 VNFPEENPTV SQKRLAKASL QKPVAKPNPN PSPALVQNPN NSFDDMCFLE EKHQVNNNNQ 240 FGLANPIDAG CNGYQYFSSD QGSNSFDCSE FGWSDQAPIT PDISSALINN NSPALFFEES 300 NPAKKLKSMD FETPYNNTEW DVSLDFLSED AVATEDNGAN PMDLWSIDEI HSMIGGVF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-22 | 127 | 184 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0769s0008.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY088204 | 0.0 | AY088204.1 Arabidopsis thaliana clone 42960 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006305171.1 | 0.0 | ethylene-responsive transcription factor RAP2-12 | ||||
Refseq | XP_023632691.1 | 0.0 | ethylene-responsive transcription factor RAP2-12 | ||||
Refseq | XP_023632692.1 | 0.0 | ethylene-responsive transcription factor RAP2-12 | ||||
Swissprot | Q9SSA8 | 0.0 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | R0I6Y9 | 0.0 | R0I6Y9_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0769s0008.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 1e-171 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0769s0008.1.p |