PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0751s0031.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 337aa MW: 37552.4 Da PI: 7.0408 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.3 | 4.4e-16 | 94 | 145 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ s+K + a+i+ A+++Ik+L+ Cagra.0751s0031.1.p 94 QRMTHIAVERNRRRQMNQHLSVLRSLMPQP---FSQKGDQASIVGGAIDFIKELE 145 79****************************...9******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.01E-16 | 92 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 92 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.11E-14 | 92 | 148 | No hit | No description |
PROSITE profile | PS50888 | 16.069 | 93 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-13 | 94 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-11 | 99 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MTLEALSSNG LLNFLLSAET LSPTPFKSLV DDLVPLPDND GIISKNTIME ISHNQELPPP 60 PPRPQRQPQA ANRGKKRRRR KPRVCKNEEE AENQRMTHIA VERNRRRQMN QHLSVLRSLM 120 PQPFSQKGDQ ASIVGGAIDF IKELEHKLLS LEAQKLHNAK SNQTVTSSTS QDSNGEQENP 180 HQQSSSLSLS QFFLHPYDPS QENRNGSTSS VKTPMEDLEV TLIETHANIR ILSRRRGFHW 240 NTMATTRPPQ LSKLVAALQS LSLSVLHLSV TTMDTYAIYS ISAKVEESCQ LSSVDDIAGA 300 VHHMLSIIEE EPICCSSISE LPFDFSLNHT NATHSL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 74 | 80 | KKRRRRK |
2 | 74 | 81 | KKRRRRKP |
3 | 75 | 80 | KRRRRK |
4 | 76 | 82 | RRRRKPR |
5 | 94 | 105 | RMTHIAVERNRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0751s0031.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK221613 | 0.0 | AK221613.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL07-91-M02. | |||
GenBank | BT025663 | 0.0 | BT025663.1 Arabidopsis thaliana At5g46690 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006280777.1 | 0.0 | transcription factor bHLH71 | ||||
Swissprot | Q56XR0 | 0.0 | BH071_ARATH; Transcription factor bHLH71 | ||||
TrEMBL | R0GMW0 | 0.0 | R0GMW0_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0751s0031.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10389 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46690.1 | 1e-142 | beta HLH protein 71 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0751s0031.1.p |
Publications ? help Back to Top | |||
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