PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0716s0040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | AP2 | ||||||||
Protein Properties | Length: 327aa MW: 36747.8 Da PI: 9.5455 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.2e-17 | 106 | 155 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g Cagra.0716s0040.1.p 106 SNYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYTAARAYDRAAIKFRG 155 57*******************......55************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.97E-15 | 106 | 163 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.1E-9 | 106 | 155 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.845 | 107 | 163 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.13E-24 | 107 | 162 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-16 | 107 | 162 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-29 | 107 | 169 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MLDLNLKILS THNEDEEDCK VPTASIFNQE KEDDSIDPSA NKLSLITFGI LKRKEDVEAI 60 PMPPPPESGL SGAGSEWLNL SPMQGKKQEM LVMKKKSRRG PRSRSSNYRG VTFYRRTGRW 120 ESHIWDCGKQ VYLGGFDTAY TAARAYDRAA IKFRGLQADI NFIVDDYKQD FEKMKNLSKE 180 EFVQTLRRAS ASLARGGSKY KNNYMKNDYI HLFQNREWNA SAAKCNEIRK IEAGEIKLGA 240 HHNKGNEHKD LDLSLGISST PKNITLKPAA DYYMGMNRSA TSLYGKALPV YLPITEMKPL 300 KTVVASSGFP FIAMINSSSF SNCFDP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269|PubMed:14573523}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0716s0040.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172 after photoperiod changement. {ECO:0000269|PubMed:14573523}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY576276 | 0.0 | AY576276.1 Arabidopsis thaliana AP2 domain transcription factor (SNZ) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294578.1 | 0.0 | AP2-like ethylene-responsive transcription factor SNZ | ||||
Swissprot | Q6PV67 | 1e-169 | SNZ_ARATH; AP2-like ethylene-responsive transcription factor SNZ | ||||
TrEMBL | R0FXN0 | 0.0 | R0FXN0_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0716s0040.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10858 | 18 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G39250.1 | 1e-155 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0716s0040.1.p |
Publications ? help Back to Top | |||
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