PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0686s0075.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 324aa    MW: 36280.7 Da    PI: 9.816
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0686s0075.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.34.8e-1426125186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrtses.s 76 
                          +W+++ + +Li+a  ++  +l+rg+l++++W+ev++++             ++ +  r+ +qCk++++ l+k+yk +k++ ++ +++s  
  Cagra.0686s0075.1.p  26 CWSEEATFTLIQAWGNRFVELSRGNLRQKHWQEVANAVndrhfnsgrnvsaAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSESNPGSyI 115
                          7************************************************997777789********************999987644426 PP

             trihelix  77 stcpyfdqle 86 
                          s +p+f+ l+
  Cagra.0686s0075.1.p 116 SPWPFFSALD 125
                          89****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-2424127No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MMDSAHDSFS PGSSRPSPST LSREDCWSEE ATFTLIQAWG NRFVELSRGN LRQKHWQEVA  60
NAVNDRHFNS GRNVSAAKSQ PYRTDVQCKN RIDTLKKKYK VEKARVSESN PGSYISPWPF  120
FSALDDLLRE SFPTSSTPDS TDNNHPNQRL SLPMAIIPVP VAPRSAIPRR PATSPAIIPH  180
VGDDLLGFRG NLNAFAAAAA AAACPASEDD SEGSRSRSSG RSGSNKKRER EIEKKQGYKE  240
VADAIERLGQ IYERVEERKR KEMVELEKQR MRFAKELECH RMQLFTEMQV RLHKLRRTSG  300
SKGPTSSASA ALEYGMMDFP SYL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0686s0075.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180840.0AK118084.1 Arabidopsis thaliana At3g58630 mRNA for unknown protein, complete cds, clone: RAFL19-33-K15.
GenBankBT0055200.0BT005520.1 Arabidopsis thaliana clone U50694 unknown protein (At3g58630) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291499.10.0trihelix transcription factor ASIL2 isoform X2
RefseqXP_023638761.10.0trihelix transcription factor ASIL2 isoform X2
RefseqXP_023638762.10.0trihelix transcription factor ASIL2 isoform X2
TrEMBLR0FPF30.0R0FPF3_9BRAS; Uncharacterized protein
STRINGCagra.0686s0075.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-162sequence-specific DNA binding transcription factors