PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0666s0044.2.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 317aa    MW: 35469.2 Da    PI: 9.0573
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0666s0044.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07207254448
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          WT +E  +lvd++  +G g W+ I + +     +Rt+ +++++w+++l
  Cagra.0666s0044.2.p 207 WTVDEVMKLVDGISHFGVGKWTDIKNLFFhsaAHRTPIDIRDKWRNLL 254
                          **********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-12199260IPR009057Homeodomain-like
PROSITE profilePS5129414.649199258IPR017930Myb domain
SuperFamilySSF466893.89E-16201256IPR009057Homeodomain-like
SMARTSM007172.4E-7203256IPR001005SANT/Myb domain
CDDcd116601.55E-19205255No hitNo description
PfamPF139216.3E-7207260No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
LGGLDSCSTQ DVGAGLKFEI LDGFLDEVEE VEDIYASHDL SSIETEVKKN VSELDGDPYG  60
LKNNHSSNSP GISGNISESS KETASHAKSP NQNASNERVK DSLDSNESED DNKPLSTFIG  120
SWVKRGKNRK KNLSNTGYSR INSSGERMSC VSYGFRPRKG PMKKYMHTST ESTFSDDQLT  180
SSESEDDISV TKTSKTRSDR RKHQRMWTVD EVMKLVDGIS HFGVGKWTDI KNLFFHSAAH  240
RTPIDIRDKW RNLLKASYKD MHNDGQAEER RKSVACSIPK DELASLHPYP FSKSSCFIHD  300
SSRSRSSAKK KKKRRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308314KKKKKRR
2309314KKKKRR
3310314KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0666s0044.2.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2304480.0AK230448.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-48-F14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295772.10.0uncharacterized protein LOC17889687
RefseqXP_023639795.10.0uncharacterized protein LOC17889687
RefseqXP_023639796.10.0uncharacterized protein LOC17889687
RefseqXP_023639797.10.0uncharacterized protein LOC17889687
RefseqXP_023639798.10.0uncharacterized protein LOC17889687
TrEMBLR0HTE80.0R0HTE8_9BRAS; Uncharacterized protein
STRINGCagra.0666s0044.1.p0.0(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-19TRF-like 6