PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0666s0044.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 323aa    MW: 36149 Da    PI: 9.2548
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0666s0044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.7e-07213260448
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          WT +E  +lvd++  +G g W+ I + +     +Rt+ +++++w+++l
  Cagra.0666s0044.1.p 213 WTVDEVMKLVDGISHFGVGKWTDIKNLFFhsaAHRTPIDIRDKWRNLL 260
                          **********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.649205264IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-12205266IPR009057Homeodomain-like
SuperFamilySSF466894.04E-16207262IPR009057Homeodomain-like
SMARTSM007172.4E-7209262IPR001005SANT/Myb domain
CDDcd116601.52E-19211261No hitNo description
PfamPF139216.4E-7213266No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
LGGLDSCSTQ DVGAGLKFEI LDGFLDEVEE VEDIYASHDL SSIGKHIFPE TEVKKNVSEL  60
DGDPYGLKNN HSSNSPGISG NISESSKETA SHAKSPNQNA SNERVKDSLD SNESEDDNKP  120
LSTFIGSWVK RGKNRKKNLS NTGYSRINSS GERMSCVSYG FRPRKGPMKK YMHTSTESTF  180
SDDQLTSSES EDDISVTKTS KTRSDRRKHQ RMWTVDEVMK LVDGISHFGV GKWTDIKNLF  240
FHSAAHRTPI DIRDKWRNLL KASYKDMHND GQAEERRKSV ACSIPKDELA SLHPYPFSKS  300
SCFIHDSSRS RSSAKKKKKR RS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314320KKKKKRR
2315320KKKKRR
3316320KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0666s0044.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295772.10.0uncharacterized protein LOC17889687
RefseqXP_023639795.10.0uncharacterized protein LOC17889687
RefseqXP_023639796.10.0uncharacterized protein LOC17889687
RefseqXP_023639797.10.0uncharacterized protein LOC17889687
RefseqXP_023639798.10.0uncharacterized protein LOC17889687
TrEMBLR0HTE80.0R0HTE8_9BRAS; Uncharacterized protein
STRINGCagra.0666s0044.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92001927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-19TRF-like 6