PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0666s0039.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YB
Protein Properties Length: 179aa    MW: 19492.8 Da    PI: 6.947
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0666s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB181.57.1e-5728125198
                NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                          vreqdrflPian+srimk+ lP n+ki+kdake+vqecvsefisf+tseasdkcqrekrktingddllwa+atlGfe+y+eplk+yl++y
  Cagra.0666s0039.1.p  28 VREQDRFLPIANISRIMKRGLPPNGKIAKDAKEIVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEEYIEPLKLYLMRY 117
                          69**************************************************************************************** PP

                NF-YB  91 relegekk 98 
                          re+eg++k
  Cagra.0666s0039.1.p 118 REMEGDTK 125
                          *****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.0E-5426146IPR009072Histone-fold
SuperFamilySSF471132.1E-4031143IPR009072Histone-fold
PfamPF008081.9E-273498IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.7E-216280No hitNo description
PROSITE patternPS0068506581IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.7E-218199No hitNo description
PRINTSPR006153.7E-21100118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MAESQAKSPG GGGSHESGGD QSPRSLHVRE QDRFLPIANI SRIMKRGLPP NGKIAKDAKE  60
IVQECVSEFI SFITSEASDK CQREKRKTIN GDDLLWAMAT LGFEEYIEPL KLYLMRYREM  120
EGDTKGSAKG GDANAKKDGQ SSQNGQFSQL AHQGSFPQGP YGNSQAQQHM MVPMPGTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B1e-4726119194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-4726119194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0666s0039.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0704770.0AY070477.1 Arabidopsis thaliana At2g37060/T2N18.18 mRNA, complete cds.
GenBankAY0916730.0AY091673.1 Arabidopsis thaliana At2g37060/T2N18.18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640153.11e-131nuclear transcription factor Y subunit B-8
RefseqXP_023640154.11e-131nuclear transcription factor Y subunit B-8
SwissprotQ8VYK41e-121NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLE4MX361e-121E4MX36_EUTHA; mRNA, clone: RTFL01-13-K14
TrEMBLV4M7P81e-121V4M7P8_EUTSA; Uncharacterized protein
STRINGCagra.0666s0039.1.p1e-130(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.31e-110nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]