PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0666s0032.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family S1Fa-like
Protein Properties Length: 77aa    MW: 8164.92 Da    PI: 10.7983
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0666s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA136.46.6e-43876270
                 S1FA  2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                         ++a+veakGlnPGlivllvvggll++fl++ny++y+yaqknlPP+kkkP+skkklkreklkqGv+vPGe
  Cagra.0666s0032.1.p  8 GKAAVEAKGLNPGLIVLLVVGGLLVTFLIANYVMYMYAQKNLPPKKKKPISKKKLKREKLKQGVPVPGE 76
                         5789****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190130.0011276No hitNo description
PfamPF046891.6E-381276IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MSSEGSAGKA AVEAKGLNPG LIVLLVVGGL LVTFLIANYV MYMYAQKNLP PKKKKPISKK  60
KLKREKLKQG VPVPGE*
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0666s0032.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3728926e-81AF372892.1 Arabidopsis thaliana At2g37120/T2N18.12 mRNA, complete cds.
GenBankAY0854396e-81AY085439.1 Arabidopsis thaliana clone 1517 mRNA, complete sequence.
GenBankBT0026696e-81BT002669.1 Arabidopsis thaliana At2g37120/T2N18.12 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296264.11e-45DNA-binding protein S1FA2
SwissprotQ423379e-30S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLR0G1942e-44R0G194_9BRAS; Uncharacterized protein
STRINGCagra.0666s0032.1.p4e-45(Capsella grandiflora)
STRINGXP_006296264.14e-45(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2380644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37120.13e-14S1FA-like DNA-binding protein