PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0664s0004.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARR-B
Protein Properties Length: 453aa    MW: 51289.1 Da    PI: 4.5855
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0664s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.47.7e-24215273155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel....mkvkgLtlehvkSHLQkYRl 55 
                          kpr+ Wtp+LH++F  ave++G  ekA Pk+il++    m+v+gLt+++++SHLQkYR 
  Cagra.0664s0004.1.p 215 KPRMSWTPDLHQKFEAAVEKMGSVEKAFPKQILKCmqeeMNVQGLTRNNIASHLQKYRQ 273
                          79******************************9873333589****************6 PP
2Response_reg65.62.3e-22451491105
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vd + +   l+++++e+  y +v+  ++geea++ l +++  +Dl++ D  mp+++Gl++lk+i +e  +lp+++++   ++e++ e
  Cagra.0664s0004.1.p  45 VLLVDADSNSSLLMKNLMEQYSY-QVTKHEKGEEAMAFLMKSKqeIDLVVWDFHMPDINGLDALKTIGKEM-DLPVVIMSHDHKKETVME 132
                          899*9999***************.***************777778**********************6644.7*******9999****** PP

                          HHHTTESEEEESS--HH CS
         Response_reg  89 alkaGakdflsKpfdpe 105
                            k Ga dfl+Kp+++e
  Cagra.0664s0004.1.p 133 SAKNGACDFLVKPVSKE 149
                          *************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.83E-2642164IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.0E-2942180No hitNo description
SMARTSM004488.1E-1843154IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011035.00744159IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.1E-1945149IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.49E-1946154No hitNo description
PROSITE profilePS512949.855212276IPR017930Myb domain
SuperFamilySSF466895.2E-14213275IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-23214273IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-20215273IPR006447Myb domain, plants
PfamPF002492.7E-8217272IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MSVPSNILDE ISGNLREDVL VCDDEIESPI EDDDDEEFPT TTIRVLLVDA DSNSSLLMKN  60
LMEQYSYQVT KHEKGEEAMA FLMKSKQEID LVVWDFHMPD INGLDALKTI GKEMDLPVVI  120
MSHDHKKETV MESAKNGACD FLVKPVSKEV TAVLWQHVFR KRMSKSGLDK PDESETVESD  180
PDEYDDLGQD NLYQSNGEGS GNTCDQKGDK SKFKKPRMSW TPDLHQKFEA AVEKMGSVEK  240
AFPKQILKCM QEEMNVQGLT RNNIASHLQK YRQGANKKTS ASQETREDSG WRNAGQDPPL  300
AASNPPLNSN VNLQSKGTFF MNDQAVPRTS YFMNDQVAMN PTTQYSSNGY LPMNSNNYFM  360
SNHFTYIDQF QQQPPPQPQY LPSLNLSSRL TKQEVAGHMP PAMENSDPLI YNSCFPFDQD  420
EYFPLVGFNN NNREHFPPAG FNNNFDHQIG RN*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0664s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1626511e-111AL162651.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F26K9.
GenBankCP0026861e-111CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638977.10.0putative two-component response regulator ARR20
SwissprotQ9LZJ80.0ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLR0HLD90.0R0HLD9_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.0664s0004.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137711825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.11e-153response regulator 20