PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0628s0006.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TALE | ||||||||
Protein Properties | Length: 183aa MW: 20807.3 Da PI: 6.293 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.6 | 2.1e-08 | 119 | 152 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Cagra.0628s0006.1.p 119 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 152 469*****************************87 PP | |||||||
2 | ELK | 30.3 | 9.2e-11 | 73 | 94 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Cagra.0628s0006.1.p 73 ELKHELKQGYKEKIVDIREEIL 94 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51213 | 9.969 | 73 | 93 | IPR005539 | ELK domain |
SMART | SM01188 | 6.1E-4 | 73 | 94 | IPR005539 | ELK domain |
Pfam | PF03789 | 3.3E-7 | 73 | 94 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 93 | 156 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.07E-16 | 95 | 159 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.4E-11 | 95 | 160 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.30E-12 | 96 | 157 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-26 | 100 | 157 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.4E-18 | 113 | 152 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MEAVMACWEI EQSLQSLTGV SPGEGMGATM SDDEDEQVES DANMFDGSLD VLGFGPLIPT 60 ESERSLMERV RQELKHELKQ GYKEKIVDIR EEILRKRRAG KLPGDTTSVL KAWWQSHSKW 120 PYPTEEDKAR LVQETGLQLK QINNWFINQR KRNWHSNPSS STVLKNKRKS NAGDNSGRDR 180 FA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 5e-14 | 96 | 160 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0628s0006.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352966 | 0.0 | AK352966.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-H10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006287805.1 | 1e-131 | homeobox protein knotted-1-like 3 isoform X1 | ||||
Swissprot | P48000 | 1e-131 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | R0HAQ0 | 1e-130 | R0HAQ0_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0628s0006.1.p | 1e-133 | (Capsella grandiflora) | ||||
STRING | XP_006287805.1 | 1e-131 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-134 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0628s0006.1.p |
Publications ? help Back to Top | |||
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