PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0612s0011.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GRF | ||||||||
Protein Properties | Length: 386aa MW: 43109.2 Da PI: 7.225 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.6 | 3e-25 | 149 | 192 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrC+RtDGKkWRCsr+v++g+k+C+rH+hrgr+rsrk++e Cagra.0612s0011.1.p 149 DPEPGRCKRTDGKKWRCSRDVVAGHKYCDRHIHRGRNRSRKPVE 192 79***************************************998 PP | |||||||
2 | QLQ | 53.7 | 6.1e-19 | 80 | 114 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 F++aQ+q+L+ Q+l+y+y++a++ vP+eLl++i+k Cagra.0612s0011.1.p 80 FSWAQWQELELQALIYRYMLAGASVPQELLLPIKK 114 *********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 8.6E-12 | 78 | 114 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.412 | 79 | 114 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.7E-13 | 80 | 112 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.793 | 149 | 193 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.7E-21 | 150 | 192 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MDLQLKQWRS QQQSESEEQG SATKISNFFF DQIQSQTTAT SAAAPLPLFV PEPTSSSSFS 60 CFSPDSSSSS SRFLKVGNFF SWAQWQELEL QALIYRYMLA GASVPQELLL PIKKSLIHQS 120 SSMHFLHHPL QHSFPHQQPS WYWGRGAMDP EPGRCKRTDG KKWRCSRDVV AGHKYCDRHI 180 HRGRNRSRKP VESATTTTTT TATTAPSSFV LGEELGHGPN NNNFFPSGSS QHLHLSHQQS 240 CSSEMKQESN NSSNNHKRPY EAHNGFSNGR SDDGHILRPF FDDWPRSSDS TSSPMRSSTC 300 HLSISMPGNG NTSSDVSLKL STGNEEEEEE ENMRNNNNNE REQLNWWSNG GNHHNMGGPL 360 AEALRSASST PSVLHQMGIS TQVFH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0612s0011.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY102637 | 0.0 | AY102637.1 Arabidopsis thaliana transcription activator (GRF4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291235.2 | 0.0 | growth-regulating factor 4 | ||||
Swissprot | Q8L8A7 | 0.0 | GRF4_ARATH; Growth-regulating factor 4 | ||||
TrEMBL | R0HJT5 | 0.0 | R0HJT5_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.0612s0011.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1926 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 1e-165 | growth-regulating factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0612s0011.1.p |
Publications ? help Back to Top | |||
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