PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0605s0071.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TALE | ||||||||
Protein Properties | Length: 328aa MW: 36862.4 Da PI: 4.6633 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.7 | 9.6e-09 | 270 | 304 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp++ ++ LA+ +gL+++q+ +WF N+R ++ Cagra.0605s0071.1.p 270 KWPYPTEGDKIALADATGLDQKQINNWFINQRKRH 304 669*****************************885 PP | |||||||
2 | ELK | 30.1 | 1.1e-10 | 224 | 245 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK++LlrK++++++sLk EFs Cagra.0605s0071.1.p 224 DLKDRLLRKFGSRISSLKLEFS 245 69*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.4E-22 | 83 | 127 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.4E-21 | 85 | 126 | IPR005540 | KNOX1 |
SMART | SM01256 | 4.4E-25 | 134 | 185 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.7E-23 | 138 | 184 | IPR005541 | KNOX2 |
SMART | SM01188 | 6.3E-5 | 224 | 245 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.83 | 224 | 244 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.6E-7 | 224 | 245 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.341 | 244 | 307 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.82E-19 | 245 | 319 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.9E-12 | 246 | 311 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-27 | 249 | 308 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.03E-11 | 253 | 308 | No hit | No description |
Pfam | PF05920 | 4.8E-17 | 264 | 303 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 282 | 305 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MDGMYNFHSA GDYSDKAVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSAAAS 60 ALSSEAASIA PEIRRNDDNV SLSVIKSKIA SHPSYPRLLQ AYIDCQKVGA PPEIACLLEE 120 IQRESDVYKR DVVPLSCYGA DTELDEFMET YCDILVKYKS DLARPFDEAT SFLNKIEMQL 180 RNLCTGVDSA RNVSEDGAIS SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISSL 240 KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ 300 RKRHWKPSEN MPFAMMDDSG GSFFTEE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0605s0071.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT002930 | 0.0 | BT002930.1 Arabidopsis thaliana clone RAFL14-89-I21 (R20256) putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds. | |||
GenBank | BT004370 | 0.0 | BT004370.1 Arabidopsis thaliana clone U20256 putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023645734.1 | 0.0 | homeobox protein knotted-1-like 6 | ||||
Swissprot | Q84JS6 | 0.0 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | D7KNF2 | 0.0 | D7KNF2_ARALL; Uncharacterized protein | ||||
STRING | Cagra.0605s0071.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM835 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 0.0 | KNOTTED1-like homeobox gene 6 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0605s0071.1.p |
Publications ? help Back to Top | |||
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