PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0596s0025.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 161aa    MW: 18125.7 Da    PI: 5.7663
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0596s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.97.8e-111351855
                  AP2 18 eIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         eIrdp+    + +r++lg+f taeeAa a+++a++k++g
  Cagra.0596s0025.1.p  1 EIRDPK----KaARVWLGTFETAEEAALAYDRAALKFKG 35
                         799984....45************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.08E-21144No hitNo description
SuperFamilySSF541713.4E-13144IPR016177DNA-binding domain
PROSITE profilePS5103216.766143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-20144IPR001471AP2/ERF domain
SMARTSM003807.0E-16149IPR001471AP2/ERF domain
PfamPF008475.0E-6635IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
EIRDPKKAAR VWLGTFETAE EAALAYDRAA LKFKGTKAKL NFPERVQGPT TTTTITPATR  60
GGSESMNSPP PHQPAPSSTT PSWPMNYNQD ILQYAQLLTS NNEVDLSYYT SSLFSQPFST  120
PSSSSSSSQQ TQQQQQQQQQ QQREEEERSY GYHYYNYPRE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-171462066ATERF1
3gcc_A2e-171462066ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Acts as positive regulator of tolerance to waterlogging stress. Delays waterlogging-induced premature senescence by regulating stomatal closure and antioxidant enzyme activity. May function through ABI1-mediated abscisic acid (ABA) signaling pathway (PubMed:22661072). Involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:22661072}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0596s0025.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:16133218, PubMed:21069430). Induced drought stress, jasmonate (JA), salicylic acid (SA), abscisic acid (ABA) and ethylene. Down-regulated by freezing stress (PubMed:21069430). Induced by wounding in the flowering stem (PubMed:21911380). Induced by waterlogging. {ECO:0000269|PubMed:16133218, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1634911e-150AL163491.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T31B5 (ESSA project).
GenBankAL1635721e-150AL163572.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T22N19 (ESSA project).
GenBankAY5608611e-150AY560861.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g13330) mRNA, complete cds.
GenBankBT0116091e-150BT011609.1 Arabidopsis thaliana At5g13330 mRNA, complete cds.
GenBankBT0122501e-150BT012250.1 Arabidopsis thaliana At5g13330 gene, complete cds.
GenBankCP0026881e-150CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010419908.14e-81PREDICTED: ethylene-responsive transcription factor ERF113 isoform X2
RefseqXP_010419909.14e-81PREDICTED: ethylene-responsive transcription factor ERF113 isoform X1
SwissprotQ9LYU34e-62EF113_ARATH; Ethylene-responsive transcription factor ERF113
TrEMBLD7M5935e-79D7M593_ARALL; Uncharacterized protein
STRINGCagra.0596s0025.1.p1e-113(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.18e-41related to AP2 6l
Publications ? help Back to Top
  1. Huang Z,Zhao P,Medina J,Meilan R,Woeste K
    Roles of JnRAP2.6-like from the transition zone of black walnut in hormone signaling.
    PLoS ONE, 2013. 8(11): p. e75857
    [PMID:24265672]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]
  6. Matsuoka K, et al.
    RAP2.6L and jasmonic acid-responsive genes are expressed upon Arabidopsis hypocotyl grafting but are not needed for cell proliferation related to healing.
    Plant Mol. Biol., 2018. 96(6): p. 531-542
    [PMID:29344830]
  7. Yang S,Poretska O,Sieberer T
    ALTERED MERISTEM PROGRAM1 Restricts Shoot Meristem Proliferation and Regeneration by Limiting HD-ZIP III-Mediated Expression of RAP2.6L.
    Plant Physiol., 2018. 177(4): p. 1580-1594
    [PMID:29884678]