PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0578s0089.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 279aa MW: 31500.1 Da PI: 5.4525 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.5 | 2.2e-20 | 26 | 77 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr++ +g+WvAeIr+p++ r+r +lg+f taeeAa a+++a++kl+g+ Cagra.0578s0089.1.p 26 CQYRGVRQRT-WGKWVAEIREPKK---RARLWLGSFATAEEAAMAYDEAALKLYGH 77 68*****999.**********965...5*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.08E-31 | 26 | 86 | No hit | No description |
Pfam | PF00847 | 4.0E-14 | 26 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-22 | 27 | 85 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.4E-37 | 27 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.261 | 27 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-30 | 27 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MEKSSSMKQW KKGPARGKGG PQNALCQYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA 60 EEAAMAYDEA ALKLYGHDAY LNLPHLQRNT RPSLSNSQRF KWVPSRKFIS MFPSCGMLNV 120 NAQPSVHIIQ QRLEELKKTG LLSSQSYSSS SSSTESKTNT SLLDEKTSKG ETNNMFQGGD 180 QKKPEIDLTE FLQQLGILKD ESHAEATEVA ECHSPPPWNE QEETGSPFGD QNFSWDTLIE 240 MPRSETETMQ FDSINFGSYD FEDDVSFPSI WDYCGSLD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-18 | 27 | 84 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00411 | DAP | Transfer from AT3G57600 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0578s0089.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227217 | 0.0 | AK227217.1 Arabidopsis thaliana mRNA for AP2 transcription factor - like protein, complete cds, clone: RAFL09-96-P04. | |||
GenBank | AL049660 | 0.0 | AL049660.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F15B8. | |||
GenBank | AY087243 | 0.0 | AY087243.1 Arabidopsis thaliana clone 332 mRNA, complete sequence. | |||
GenBank | BT028945 | 0.0 | BT028945.1 Arabidopsis thaliana At3g57600 mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291644.1 | 0.0 | dehydration-responsive element-binding protein 2F | ||||
Swissprot | Q9SVX5 | 0.0 | DRE2F_ARATH; Dehydration-responsive element-binding protein 2F | ||||
TrEMBL | R0FPV4 | 0.0 | R0FPV4_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0578s0089.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8168 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 1e-166 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0578s0089.1.p |
Publications ? help Back to Top | |||
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