PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0568s0211.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 243aa    MW: 27346.3 Da    PI: 6.3067
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0568s0211.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-172069255
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         +y GVr+++ +gr++AeIr  +     +  r++lg+f+taeeAa a++ a++++ g
  Cagra.0568s0211.1.p 20 KYLGVRRRP-WGRYAAEIRNpF-----TkERHWLGTFDTAEEAALAYDVAARSISG 69
                         799******.**********66.....34**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.0E-302083IPR001471AP2/ERF domain
PfamPF008472.7E-112068IPR001471AP2/ERF domain
CDDcd000181.98E-292076No hitNo description
PROSITE profilePS5103220.6392077IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-202077IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-272076IPR001471AP2/ERF domain
PRINTSPR003678.7E-92132IPR001471AP2/ERF domain
PRINTSPR003678.7E-94359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MLKSRNKSKS KQEKKSQEGK YLGVRRRPWG RYAAEIRNPF TKERHWLGTF DTAEEAALAY  60
DVAARSISGS LAKTNFFYTD NITSQRQPQK LVQSSSDKDF VHPTIVSFGP DMSLGSSSSR  120
ILQDQPPENH RFVPAPISSC LQEQQFLANH INSVPHCYDN DLVVQSKEIS LPSFPNDMSS  180
SLFGYHDNTG EQGDAEHMKI GSVLSNYSHC FEYDYSENNL QSFLKDDNED PIQMIGTSSS  240
FI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1916841079Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0568s0211.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934543e-95AB493454.1 Arabidopsis thaliana At1g12890 mRNA for hypothetical protein, partial cds, clone: RAAt1g12890.
GenBankCP0026843e-95CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF13K233e-95AC012187.3 Sequence of BAC F13K23 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303870.10.0ethylene-responsive transcription factor ERF088
SwissprotQ3E7031e-95ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLR0IIP70.0R0IIP7_9BRAS; Uncharacterized protein
STRINGCagra.0568s0211.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.13e-76ERF family protein