PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0562s0030.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Trihelix

Protein Properties

Length: 296aa MW: 33177.6 Da PI: 10.0855

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0562s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.4	2.9e-16	38	121	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea+++++ +r+klk+++We+v++++ +++ ++++qCk+k+e+++kry+ + +++ + s++p++ +l+ Cagra.0562s0030.1.p 38 EWSEGAVSSLLEAYESKWVLRNRAKLKGQDWEDVARHVssraTHTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYPRLD 121 5***********************************77666666678899*************99997......46**9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.9E-21	36	123	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MENGESNQET PKSLLNHDES PKKPSASSVV VDRLKRDEWS EGAVSSLLEA YESKWVLRNR 60 AKLKGQDWED VARHVSSRAT HTKSPKTQTQ CKNKIESMKK RYRSESATAD GSSWPLYPRL 120 DHLLRGTQPQ PQAVLPLNCS VPLLLLEPPS PAVAHPPQVS YGSNGVGKIP KEDGFRPEEK 180 PEKATEMDTD SSTPVVKTKV RGKKVKRRYK EEKEEIAGSI RWLAEVVMRS ERARMETMKE 240 IERMRAEAEA KRGEIDLKRT EIMANTQLEI ARLFAVAASS GHNKAVDSSL RIGRN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0562s0030.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY084391	0.0	AY084391.1 Arabidopsis thaliana clone 106702 mRNA, complete sequence.
GenBank	AY140041	0.0	AY140041.1 Arabidopsis thaliana putative protein (At3g54390) mRNA, complete cds.
GenBank	BT006322	0.0	BT006322.1 Arabidopsis thaliana At3g54390 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006292979.1	0.0	trihelix transcription factor ASIL1
TrEMBL	R0FSP9	0.0	R0FSP9_9BRAS; Uncharacterized protein
STRING	Cagra.0562s0030.1.p	0.0	(Capsella grandiflora)
STRING	XP_006292979.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9859	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-163	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Cagra.0562s0030.1.p