PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0558s0010.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 742aa    MW: 82341.9 Da    PI: 6.2664
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0558s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-085799347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
  Cagra.0558s0010.1.p 57 AWTHQEEESFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 99
                         6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-1148104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-552102IPR009057Homeodomain-like
PROSITE profilePS5129313.5253104IPR017884SANT domain
SMARTSM007175.1E-654102IPR001005SANT/Myb domain
CDDcd001671.21E-557100No hitNo description
PfamPF002493.1E-65799IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MLNQFARYCE MQAEQKPGGP IDEGHISNQN SNPNLLSSAS ISVAQFPVKK PTRQWAAWTH  60
QEEESFFTAL RQVGKNFEKI TSRVQSKNKD QVRHYYYRLV RRMNKLLGPE LCLDAKNPKD  120
TNAAMLRWWS LLEKYSCKAS KLHLKPRRFK LFIEALEHQL LKDRRKSIRK RACQGENFSS  180
ASLGNISSHS RERGLDNRPF KLILSDSQNV KKLGSGRAST KHGESLGVNL GDEKEDSAFG  240
RGGRQRRKQG YRKWERAAID GVSLVADAAE HLERTSIDKD MDDQKDLGSP RYLTGKSPLS  300
LCSSGDVPLS DANMQFSAKL KLQLFPIDEC TRRSLEMDKH NPHLELTLSN RKKISSVLEH  360
INRKWGSSSC ATGELMLFPY NARKETVTCH QRWTHDSFLS AAEVHSLVGS PSIFRLRYGW  420
FVHDSSGSFI SQVPTSDLCP SHEDDMNVDG VNEVNMLLTE SGPLSVHLTA EQPTSVEPSL  480
GLVCASGDTD DRPTESRDDY EPASLTITPF ENLSSVNAQS AGEWADSLTN ISIGDLLSEV  540
PDDIDSDDVD PPATEGSHYL LRDVSFASDS FDAAIAAHIL RHQNKPSTLL PSTSGSSSLW  600
DDEETRDAFS FQKNRFADSS KLANVSFPGG VARVNGKSSQ LVEALSPDDK LPDHGEPMEE  660
GPTDPHTMDS PGKTHCGLAD IYWPDSLGPL DLDIRSSKYT DDLILSESLG GLSRLIATSL  720
DAFQNCSLFG FDNKKDKSNM V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0558s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0640680.0AY064068.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds.
GenBankAY0963760.0AY096376.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640301.10.0TSL-kinase interacting protein 1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLD7LJ990.0D7LJ99_ARALL; Tsl-kinase interacting protein 1
STRINGCagra.0558s0010.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96332124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.10.0TSL-kinase interacting protein 1