PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0551s0042.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CO-like
Protein Properties Length: 329aa    MW: 37188.9 Da    PI: 6.4371
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0551s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.73.7e-061142435
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                         r C+ +++  +  +C+ ++  lC  C  + H 
  Cagra.0551s0042.1.p 11 RLCDYCDSSVALVYCKADSAKLCLACDKQVHA 42
                         78**************************9995 PP
2zf-B_box17.58.9e-065592539
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg...Htv 39
                          C+ +++ + +lfC + ++ lC++C  ++H +   H +
  Cagra.0551s0042.1.p 55 LCDSCHDSPSSLFCDTERSVLCQNCDWQHHTStslHCR 92
                         7***************************7755777765 PP
3CCT60.36.4e-21283326144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R+ al+RYkeK+k+R++eK+irYesRK++AesR R++GrF+k+a
  Cagra.0551s0042.1.p 283 RNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKAA 326
                          899***************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-11855IPR000315B-box-type zinc finger
PROSITE profilePS5011910.239855IPR000315B-box-type zinc finger
CDDcd000212.53E-51155No hitNo description
PROSITE profilePS5011910.045195IPR000315B-box-type zinc finger
CDDcd000213.17E-75594No hitNo description
SMARTSM003361.25695IPR000315B-box-type zinc finger
PfamPF062038.0E-15283325IPR010402CCT domain
PROSITE profilePS5101714.743283325IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEDKEEGRRH RLCDYCDSSV ALVYCKADSA KLCLACDKQV HAANQLFVKH FRSLLCDSCH  60
DSPSSLFCDT ERSVLCQNCD WQHHTSTSLH CRRPFEGFSG CPSVPEFLAI LGLDDLAPDP  120
GLLLDHAPPE ILSLSDLVAS GGSATHHFRA TDVPPLPKNR HATCGKYKDE MIRQLRGLAR  180
SEPSCLKFEA TDAEIDAGFQ FLAPDLFPTC ELESGLKWFD QQDEDFPYCS LLRNLSESDE  240
KHENVDRNSS VMVPVSDCFN RPEEDNVVVP LCTTTREINS LERNSALSRY KEKKKSRRYE  300
KHIRYESRKV RAESRTRIRG RFAKAADP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0551s0042.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0234130.0BT023413.1 Arabidopsis thaliana At2g47890 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294564.10.0zinc finger protein CONSTANS-LIKE 13 isoform X1
SwissprotO822560.0COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLR0FWW40.0R0FWW4_9BRAS; Uncharacterized protein
STRINGCagra.0551s0042.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-180B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]