PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0549s0004.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 300aa MW: 32741 Da PI: 6.6 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.2 | 7.7e-33 | 42 | 95 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+ave LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR Cagra.0549s0004.2.p 42 PRLRWTPDLHRCFVNAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQMYRG 95 8****************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.139 | 38 | 98 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-30 | 38 | 95 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.29E-14 | 42 | 94 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-23 | 42 | 95 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-8 | 43 | 94 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MGRCGGGRNG NGNGNGNFTG VGFNGNGGGG GGVRPYVRSP VPRLRWTPDL HRCFVNAVEI 60 LGGQHRATPK LVLKMMDVKG LTISHVKSHL QMYRGSKLTL GKPVEESSSS SSIRRRGRRR 120 QDSGEEDYHL HDNLSLLSSS RNDCLLGFHS FPLSSHSPLL LRGGGGGGRS KELQQTSAES 180 GGYDDDDDFL HIINMNTTIH TTTFPSHHLP SSKKTEEWRE QEQEQEEEEE EEEEEDLSLS 240 LSLNHHHHHH WRSNGSSVSE TSEAAVSTCS APFVSKDCFA SSSKIDDLNL NLSISLLGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-18 | 43 | 97 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-18 | 43 | 97 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-18 | 43 | 97 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-18 | 43 | 97 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0549s0004.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291399.2 | 1e-127 | putative Myb family transcription factor At1g14600 isoform X1 | ||||
Swissprot | Q700D9 | 4e-65 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | R0FP51 | 1e-125 | R0FP51_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.0549s0004.1.p | 1e-130 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 1e-44 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0549s0004.2.p |