PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0509s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 541aa    MW: 62818.4 Da    PI: 9.304
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0509s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.72.2e-16101173280
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                          W+ +evlaL+++r+ +e+++ +       We+ s+k++e gf+rsp++Ckek+e+ ++ry + ++++++  s+++++++
  Cagra.0509s0002.1.p 101 WCSDEVLALLRFRSTVENWFPEF-----TWEHTSRKLAEVGFKRSPQECKEKFEEEERRYFNGNNNNNNT-SDHHQHIS 173
                          ********************998.....9************************************99985.56555555 PP
2trihelix104.57.5e-33442531186
             trihelix   1 rWtkqevlaLiearr...emeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          rW+k+evlaLi++rr   +m+++ ++  ++++ plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+tcpyf+ql
  Cagra.0509s0002.1.p 442 RWPKDEVLALINIRRnisNMNDDGNSspSSKAVPLWERISKKMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-PLDSRTCPYFHQL 530
                          8**************55533333333225799*******************************************8.9***********9 PP

             trihelix  86 e 86 
                          +
  Cagra.0509s0002.1.p 531 T 531
                          8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.49493152IPR017877Myb-like domain
PfamPF138372.7E-1199171No hitNo description
Gene3DG3DSA:1.10.10.604.2E-4433505IPR009057Homeodomain-like
CDDcd122031.61E-25441511No hitNo description
PfamPF138371.8E-20441532No hitNo description
PROSITE profilePS500907.248442504IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MFDGGVPEQI HRFITSPPPP ASPLPPHQPA AERSLPFPAS FASFNTNHHQ AQHILSLDSR  60
KIIHHHHHHH HHDIKDSGVA TTAEWIGHTD HDGSDNHHHP WCSDEVLALL RFRSTVENWF  120
PEFTWEHTSR KLAEVGFKRS PQECKEKFEE EERRYFNGNN NNNNTSDHHQ HISNYNNKGN  180
SYRIFSEVEE FYDGHVSPEV GDNQNKRTNS LERKGNVEET GQDLMDEDKL RDQDQGQVEE  240
ASMGNKMNLI DVGKVVEDDV KSSSSSSLMM VMREKKKKKR KRKKEKERFG VLKGFCEGLV  300
RNMIAQQEEM HKKLLEDMAK KEEEKIAREE DWKKQEMERV NKELEIRKQE QAMASDRNTN  360
IIKFISKFTD HDLDQDLSSL ALPQTQGRRK KFQTSSSPLL HQTLTPLTTD KSLQPIPTKT  420
LKTKTQNPKP PKSEDKSDLG KRWPKDEVLA LINIRRNISN MNDDGNSSPS SKAVPLWERI  480
SKKMLELGYK RSAKRCKEKW ENINKYFRKT KDVNKKRPLD SRTCPYFHQL TALYSQPSTG  540
T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272283REKKKKKRKRKK
2274283KKKKKRKRKK
3275280KKKKRK
4275283KKKKRKRKK
5277282KKRKRK
6277283KKRKRKK
7278286KRKRKKEKE
8279283RKRKK
9279284RKRKKE
10279285RKRKKEK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0509s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2272850.0AK227285.1 Arabidopsis thaliana mRNA for GTL1 - like protein, complete cds, clone: RAFL11-11-K16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287322.10.0trihelix transcription factor GTL2
SwissprotQ8H1810.0GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLR0H6180.0R0H618_9BRAS; Uncharacterized protein
STRINGCagra.0509s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.10.0Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]