PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0495s0069.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 410aa MW: 44763.6 Da PI: 6.8804

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0495s0069.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.5	0.00055	269	304	15	55
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +++ L +l+ + +K + a++L +A+ YI+ Lq Cagra.0495s0069.1.p 269 KLGGRIAALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 304 5556788888888887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.299	254	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.45E-5	264	308	No hit	No description
SuperFamily	SSF47459	6.02E-10	264	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-7	269	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MNRGVLESSP VQQLMAAGNP NWWNVSGGMR PPPPLIGHQQ APLPPHMTPN NNNYLRPRMM 60 PTLLPHFLPS PATSSSSSSS PSLPNNPNLS SWLESNDLPP ESWSLSQLLL GGLMMGEEER 120 LEILNHHNQH SFQGKMRLEN WEEQVLSHQQ ASMVPVDIKQ ENSINNNNGY VISSPNSPLN 180 KSCVTTTTTS LNSNDDNNTN NNNNNNNNNN NMLDFSSNHN GLHLSEGRRT PPDLSSECNS 240 LDIGGSTNKK PRLQPSPSSQ STLKVRKEKL GGRIAALHQL VSPFGKTDTA SVLSEAIGYI 300 RFLQSQIEAL SHPYFGTTAS GNMRHQQQQH LQGDRSCIFP EDPGQLVNDQ CMKRRGASSS 360 ADTQNASEEP KKDLRSRGLC LVPISCTLQV GSDNGADYWA PALGSAGFH*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MNRGVLESSP VQQLMAAGNP NWWNVSGGMR PPPPLIGHQQ APLPPHMTPN NNNYLRPRMM  60
PTLLPHFLPS PATSSSSSSS PSLPNNPNLS SWLESNDLPP ESWSLSQLLL GGLMMGEEER  120
LEILNHHNQH SFQGKMRLEN WEEQVLSHQQ ASMVPVDIKQ ENSINNNNGY VISSPNSPLN  180
KSCVTTTTTS LNSNDDNNTN NNNNNNNNNN NMLDFSSNHN GLHLSEGRRT PPDLSSECNS  240
LDIGGSTNKK PRLQPSPSSQ STLKVRKEKL GGRIAALHQL VSPFGKTDTA SVLSEAIGYI  300
RFLQSQIEAL SHPYFGTTAS GNMRHQQQQH LQGDRSCIFP EDPGQLVNDQ CMKRRGASSS  360
ADTQNASEEP KKDLRSRGLC LVPISCTLQV GSDNGADYWA PALGSAGFH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0495s0069.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488634	0.0	AF488634.2 Arabidopsis thaliana clone bHLH068 putative bHLH transcription factor mRNA, complete cds.
GenBank	AY081316	0.0	AY081316.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.
GenBank	BT000121	0.0	BT000121.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006283829.1	0.0	transcription factor bHLH68
Swissprot	Q8S3D1	0.0	BH068_ARATH; Transcription factor bHLH68
TrEMBL	R0F4Q3	0.0	R0F4Q3_9BRAS; Uncharacterized protein
STRING	Cagra.0495s0069.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1872	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cagra.0495s0069.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]