PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0493s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family BES1
Protein Properties Length: 685aa    MW: 76715.8 Da    PI: 6.0961
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0493s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822162.92e-50802291145
               DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasasp 90 
                          gg+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGw v++DGttyr++ +p+    ++++  ++s+
  Cagra.0493s0006.1.p  80 GGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVDADGTTYRQSHQPN----HVVQYPTRSI 165
                          6899************************************************************************....8999999999 PP

               DUF822  91 esslq.sslkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlsl 145
                          es+l+ sslk++a+a+   +++++++ ++ +sp+slds+ +a++        +  +p++sv +l
  Cagra.0493s0006.1.p 166 ESPLSsSSLKNCAKAALECQQHSVLRIDENLSPVSLDSVVIAESdhpgngryTGASPITSVGCL 229
                          99999899*********************************99888888777677777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.0E-4881228IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514456.83E-158247681IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.802.2E-166251681IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.7E-80257645IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.5E-52287301IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.5E-52308326IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.5E-52330351IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.5E-52423445IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.5E-52496515IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.5E-52530546IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.5E-52547558IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.5E-52565588IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.5E-52603625IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MHTLNNTTTG SQDPNLDPIP PDPDQFPNRS HNHHPQTRRP RGFAAAAAAA SIVPTESDVN  60
NGNIAGIGGG EGSSGGGGGG GKGKREREKE KERTKLRERH RRAITSRMLA GLRQYGNFPL  120
PARADMNDVI AALAREAGWS VDADGTTYRQ SHQPNHVVQY PTRSIESPLS SSSLKNCAKA  180
ALECQQHSVL RIDENLSPVS LDSVVIAESD HPGNGRYTGA SPITSVGCLE ANQLLQDVHS  240
TEPRNDFTEN FYVPVYAMLP VGIIDSFGQL VDPEGVRQEL SYMKSLNVDG VVIDCWWGIV  300
EGWNPQKYVW SGYRELFNRI RDFKLKLQVV MAFHEYGGNA SGNVIISLPQ WVLEIGKDNP  360
DIFFTDREGR RSFECLNWSI DKERVLHGRT GIEVYFDFMR SFRSEFDDLF VEGLVAAVEI  420
GLGASGELKY PSFPERMGWI YPGIGEFQCY DRYSQSNLQK EAKSRGFAFW GKGPENAGQY  480
NSQPHETGFF QERGEYDSYY GRFFLNWYSQ LLIGHAENVL SLASLAFEET TIIVKIPAIY  540
WSYKTASHAA ELTAGYYNPS NRDGYSLLFE TLKKYSVTVK FVCPGPQMSS NEHEEALADP  600
EGLSWQVINA AWDKKLLIGG ENAITCFDRE GCMRLVDIAK PRNHPDSNHF FFFTYRQPSP  660
LIQGSTCFPD LNYFIKHMHG EIQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-11625268111444Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0493s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171400.0AK117140.1 Arabidopsis thaliana At5g45300 mRNA for putative beta-amylase, complete cds, clone: RAFL16-68-D16.
GenBankBT0064820.0BT006482.1 Arabidopsis thaliana At5g45300 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279583.20.0beta-amylase 8 isoform X1
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLR0EUN60.0R0EUN6_9BRAS; Beta-amylase (Fragment)
STRINGCagra.0493s0006.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108882832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]