PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0463s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 200aa MW: 23023 Da PI: 6.7962 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.4 | 5.2e-18 | 60 | 114 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ ++t+eql Le +F+++ ++++e++ +L+k+lgL+ rq vWFqNrRa++k Cagra.0463s0004.1.p 60 KKKKRLTSEQLASLEICFQEDIKLDTERKLKLSKELGLQPRQTAVWFQNRRARWK 114 57778*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 111.7 | 4.8e-36 | 60 | 151 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl++eq+++LE +F+e+ kL++erK +l++eLglqprq avWFqnrRAR+k k+lE+ y++L+++yd++ +e+++L++ev++Lr+ Cagra.0463s0004.1.p 60 KKKKRLTSEQLASLEICFQEDIKLDTERKLKLSKELGLQPRQTAVWFQNRRARWKVKHLEESYNSLRQEYDNVWREKQMLHDEVRKLRAI 149 59*************************************************************************************976 PP HD-ZIP_I/II 91 lk 92 ++ Cagra.0463s0004.1.p 150 IQ 151 65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.42E-18 | 44 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.18 | 56 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-16 | 58 | 120 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.51E-15 | 60 | 117 | No hit | No description |
Pfam | PF00046 | 1.2E-15 | 60 | 114 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-18 | 66 | 114 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MPSPGLESNG WLHSFSYDPY AGNSYTHAAM ETGPVITVPE SEMMINTYQC DPSNNDEMIK 60 KKKRLTSEQL ASLEICFQED IKLDTERKLK LSKELGLQPR QTAVWFQNRR ARWKVKHLEE 120 SYNSLRQEYD NVWREKQMLH DEVRKLRAII QRDQGLMMNN NQIAGGDHTN NGIGEYNSPM 180 MVGSSHVLWP GISQPPNPW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0463s0004.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM214233 | 1e-135 | KM214233.1 Capsella grandiflora isolate C.g926a RCO-A (RCO-A) gene, complete cds. | |||
GenBank | KM214234 | 1e-135 | KM214234.1 Capsella grandiflora isolate C.g926b RCO-A (RCO-A) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006289854.2 | 1e-116 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 1e-75 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A077B3F2 | 1e-114 | A0A077B3F2_9BRAS; RCO-A | ||||
STRING | Cagra.0463s0004.1.p | 1e-149 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 6e-78 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0463s0004.1.p |
Publications ? help Back to Top | |||
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