PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0434s0026.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 359aa    MW: 40735.5 Da    PI: 5.3752
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0434s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-133683148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd++l++ +   G  +W++ ++  g+ R++k+c++rw +yl
  Cagra.0434s0026.1.p 36 KGPWTIEEDKKLINFILTNGHCCWRALPKLSGLLRCGKSCRLRWINYL 83
                         79******************************99************97 PP
2Myb_DNA-binding51.32.7e-1693133547
                          -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++ E++  +d+++qlG++ W++Ia++++ gRt++++k++w+++
  Cagra.0434s0026.1.p  93 SEYEEQMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 133
                          6779**************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-192785IPR009057Homeodomain-like
PROSITE profilePS5129412.2613183IPR017930Myb domain
SuperFamilySSF466891.68E-2633130IPR009057Homeodomain-like
SMARTSM007172.1E-93585IPR001005SANT/Myb domain
PfamPF002496.4E-123683IPR001005SANT/Myb domain
CDDcd001675.21E-73883No hitNo description
PROSITE profilePS5129426.34184138IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2486138IPR009057Homeodomain-like
SMARTSM007172.5E-1488136IPR001005SANT/Myb domain
PfamPF002495.1E-1493133IPR001005SANT/Myb domain
CDDcd001678.11E-1196134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MMIDVMGTYI RYILEHIYLE LEMGRQPCCD KVGLKKGPWT IEEDKKLINF ILTNGHCCWR  60
ALPKLSGLLR CGKSCRLRWI NYLRPDLKRG LLSEYEEQMV IDLHAQLGNR WSKIASHLPG  120
RTDNEIKNHW NTHIKKKLRK LGIDPLTHKL LSEQEASQQA QGSKKSLVPH ANDKNPKQDQ  180
EDQQNEDKQE QHHTEQDLEK NNTSASSNGF CVDEVPLLSP HEILIDVSSS HQHHHTNDDN  240
VNINTSKFTS PSSSSSSTSS CISSSVVPGD EFSKFFDEME NLDLKWLSSD DSSGENIISL  300
DGKFTNTVDT MNLWDDINDL SSLDMFMNDH DHDGIVGNGN GCSRMVLDQD SWTFDLLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26341385108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00513DAPTransfer from AT5G16600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0434s0026.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1759900.0AF175990.1 Arabidopsis thaliana putative transcription factor (MYB43) mRNA, complete cds.
GenBankAY5196250.0AY519625.1 Arabidopsis thaliana MYB transcription factor (At5g16600) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288141.10.0transcription factor MYB20
TrEMBLR0GVX60.0R0GVX6_9BRAS; Uncharacterized protein
STRINGCagra.0434s0026.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.11e-154myb domain protein 43