PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0430s0043.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C3H | ||||||||
Protein Properties | Length: 247aa MW: 25611.7 Da PI: 9.9971 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.5 | 8.5e-07 | 38 | 61 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H Cagra.0430s0043.1.p 38 KSKPCTKFFSTSGCPFGENCHFLH 61 7789******************** PP | |||||||
2 | zf-CCCH | 36.8 | 6.4e-12 | 212 | 237 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C +f++ G C +GdrC+FaHg+ Cagra.0430s0043.1.p 212 YKTKICERFSK-GNCTFGDRCHFAHGE 237 9**********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.84 | 36 | 64 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.21 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 37 | 63 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-8 | 38 | 61 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-5 | 38 | 61 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 3.21E-15 | 99 | 180 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.8E-11 | 109 | 179 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 4.2E-16 | 109 | 178 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.55 | 110 | 174 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 4.7E-12 | 112 | 176 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.76E-13 | 112 | 174 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-16 | 206 | 241 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-8 | 211 | 237 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.01E-8 | 211 | 241 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.215 | 211 | 238 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-9 | 212 | 237 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MDVRKRGRPE AGSFNSNGGG FKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL 60 HYVPGGYNAV SQMTNMGPPM PQVSRNMGGG GRFSGRGESG PGHVSSFGAS ATAKISVDAS 120 LAGAIIGKGG VSSKQICRQT GAKLSIQDHE RDPNLKNIEL EGTFEQINEA SAMVRELIGR 180 LNSAAKKPPG GGGGGGGGGM GSEGKPHPGS NYKTKICERF SKGNCTFGDR CHFAHGEAEL 240 RRSGIA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0430s0043.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227373 | 0.0 | AK227373.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-04-J23. | |||
GenBank | AY085746 | 0.0 | AY085746.1 Arabidopsis thaliana clone 17632 mRNA, complete sequence. | |||
GenBank | BT025032 | 0.0 | BT025032.1 Arabidopsis thaliana At3g12130 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298416.1 | 1e-179 | zinc finger CCCH domain-containing protein 36 isoform X1 | ||||
Swissprot | Q9C7C3 | 1e-153 | C3H36_ARATH; Zinc finger CCCH domain-containing protein 36 | ||||
TrEMBL | R0HNJ7 | 1e-177 | R0HNJ7_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0430s0043.1.p | 1e-178 | (Capsella grandiflora) | ||||
STRING | XP_006298416.1 | 1e-178 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2336 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-132 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0430s0043.1.p |
Publications ? help Back to Top | |||
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