PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0391s0009.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 516aa    MW: 56433.1 Da    PI: 8.326
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0391s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.66.1e-34251307259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          dDgynWrKYGqK+vkgs+fprsYY+Ct++ Cpvkkkvers  d++v+ei+Y+g+Hnhe
  Cagra.0391s0009.1.p 251 DDGYNWRKYGQKQVKGSDFPRSYYKCTHTACPVKKKVERSL-DGQVTEIIYKGQHNHE 307
                          8****************************************.***************7 PP
2WRKY105.13.6e-33416474159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct++ C v+k+ver+a+dpk+v++tYeg+Hnh+
  Cagra.0391s0009.1.p 416 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPACGVRKHVERAANDPKAVVTTYEGKHNHD 474
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-29241309IPR003657WRKY domain
PROSITE profilePS5081124.237245309IPR003657WRKY domain
SuperFamilySSF1182905.75E-26248309IPR003657WRKY domain
SMARTSM007746.4E-37250308IPR003657WRKY domain
PfamPF031066.7E-26251307IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-36401476IPR003657WRKY domain
SuperFamilySSF1182903.27E-29408476IPR003657WRKY domain
PROSITE profilePS5081137.39411476IPR003657WRKY domain
SMARTSM007746.9E-38416475IPR003657WRKY domain
PfamPF031061.6E-25417474IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MAENKQEKEQ PTKLKPSTGV SRPTISLPPR PFGEMFFSGG VGFSPGPMTL VSNLFSDPDE  60
FKSFSHLLAG AMASPAAAAV AVVATAHHQT PVSSVGDGGG SGGDVVDPRF KQNRPTGLMI  120
TQPPGMFTVP PGLSPATLLD SPSFFGLFSP LQGAFGMTHQ QALAQVTAQA VQGNNVHFQQ  180
SESEYSSSIQ QEQQQQPQTS LTVTENQSFS TGHRSQVPAP VQDSSQGQRE TSDISVSEHR  240
SQPQNADKPA DDGYNWRKYG QKQVKGSDFP RSYYKCTHTA CPVKKKVERS LDGQVTEIIY  300
KGQHNHELPQ KRGNNNGSSK NSDTATQFQT SNSNLSKTKR DQETSQVTTT EQMSEASDSE  360
EVGNAETSVG EKHEDEPDAK RRNTEVRVTE PVVASSHKTV TEPRIIVQTR SEVDLLDDGY  420
RWRKYGQKVV KGNPYPRSYY KCTTPACGVR KHVERAANDP KAVVTTYEGK HNHDVPAART  480
SSHQLRPNNQ HNTSTGNFNQ QQPVARLRLK EEQIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-43251477878Probable WRKY transcription factor 4
2lex_A3e-43251477878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0391s0009.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2247010.0AF224701.1 Arabidopsis thaliana WRKY DNA-binding protein 3 (WRKY3) mRNA, complete cds.
GenBankAK2290360.0AK229036.1 Arabidopsis thaliana mRNA for putative WRKY DNA-binding protein, complete cds, clone: RAFL16-33-J05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290926.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLR0H3G80.0R0H3G8_9BRAS; Uncharacterized protein
STRINGCagra.0391s0009.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.10.0WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]