PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0381s0009.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HB-other
Protein Properties Length: 1707aa    MW: 192224 Da    PI: 4.8982
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0381s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.4e-182480157
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                         ++kR   t+ qle+Le+ +  ++yps++ r++L+ kl+L++rq ++WF+ rR k++k
  Cagra.0381s0009.1.p 24 KSKRKMKTAAQLEVLENTYSAEPYPSEAIRADLSVKLNLSDRQLQMWFCHRRLKDRK 80
                         679****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-17780IPR009057Homeodomain-like
SuperFamilySSF466895.56E-151880IPR009057Homeodomain-like
PROSITE profilePS5007116.392181IPR001356Homeobox domain
SMARTSM003898.3E-162385IPR001356Homeobox domain
CDDcd000864.00E-132481No hitNo description
PfamPF000461.2E-152480IPR001356Homeobox domain
SMARTSM005713.4E-22526585IPR018501DDT domain
PROSITE profilePS5082715.925526585IPR018501DDT domain
PfamPF027911.5E-16527582IPR018501DDT domain
PfamPF050666.3E-15707775IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156128.2E-4910948IPR028942WHIM1 domain
PfamPF156134.0E-1310831155IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1707 aa     Download sequence    Send to blast
MEGGGSDEAE KNKTTPEGGG SESKSKRKMK TAAQLEVLEN TYSAEPYPSE AIRADLSVKL  60
NLSDRQLQMW FCHRRLKDRK STTPSKRQRK ELVTPMAVES SVNAGDLVAG NEFDSRRAVR  120
GSGSGGGGVT VVRRFNEPSS AEVRAVGYVE AQLGERLRDN GPILGMEFDP LPPGAFGMPI  180
EMPSHRKATR QAFETSLYVR PDVKPSKDHA RPIREYQFLP DLPSSRTDHS ERVSPSHHFG  240
VPIDASVMRA SAVSVGHRDD YKISPQIPNL NLATHQGKAG HVYSPNLPEY DSPYQKSYMD  300
AAAHRNLNDH PIHEDHFVKS EREVGNEDEE DDALQLERKR KNEEARISRE VEAHEKRIRR  360
ELEKQDLLRR KREEQIRKEM ERQDRERRKE EERLLREKQR EEERFMKEQM RELQRREKFL  420
KKETMRAEKM RQKEEMRREK EVARLKAANE RAIARKIAKE SMELIEDERL ELMEVAALAK  480
GLPSMLALDF ETLQNLDEYR DKQVLFPPTS VKLKKPFTVK PWNGSDENVA NLLMVWRFLI  540
TFADVLGLWP FTLDEFAQSF HDYDPRLMGE IHIVLLKTII KDIEGVTRTL LTGVGANQTA  600
SNPGGGHPHV VEGAYAWGFD IRSWRRNLNV FTWPEILRQL AVSAGLGPQL KKKNIKTLSV  660
HDENEANNSE NVILNLRKGV TAENAFAKMQ EKGLSNPRRS RHRLTPGTVK FAAFHVLSIE  720
GEKGLTILEV ADKIQNSGLR DLTTSRTPEA SVAAALSRDT KLFERVAPST YCVRASYRKD  780
AGDAETIFAE ARERIRAFKS GITDVEDVDD AERDEDSESD VGDDPEVDLN LKKEDPVAME  840
IENSIKVEPV LENGKLDTMT MKTKPGLPLT PSLPEDMKDE KRDDILADQS LEDAVANDED  900
SACFDESKLG EQWVQGLVEG DYSNLSSEER LNGLVALIGI AIEGNTIRIA LEERLEVASA  960
LKKQMWGEVQ LDKRWKEESL MRANFLSYPT AKPGLNIATP ASGNQESSSA DVTPISSQDP  1020
LSLPQTDVNN VIAGPSLQLQ ENVSGMENLQ YQQQQGYTAD RERLRAQLKA YVGYKAEELY  1080
VYRSLPLGQD RRRNRYWRFS VSASRNDPGC GRIFVELQDG RWRLIDSEED FDYLVKSLDV  1140
RGVRESHLHF MLLKIEASFK EAVRRNVEAN PGLCSISSSL DSDTAEISTT FKIELGDNNN  1200
IERCSVLQRF HSFEKWMWDN MLHPGALSAF KYGAKQSSPL FRICRICAEL HFVEDICCPS  1260
CGQMRAGPDV GELCFAEQVA QLCDNSRGGD AGFILRSSIS SPLRIRLLKI QLALVEASLP  1320
PEGLEAFWTE NVRKSWGLKL LSSSSPEELN QVLTTLEVAV KRDFLSPNFE TTSELLGLPE  1380
EALGNDFTCV VNVLPWIPNT TGGVALRLFD FDSSIVYTPD QNNDPLKDKE SEDFVGLEPD  1440
FMSNVQEKNV METPVQVAYT QEENWTDPGL GGVSSSGRGG RPPRGRGRPR SRGNGKKPTV  1500
SGKPPRGAAN SNGETMSRPR AQPRGRKNGR RSGTKGRTRP TQGTLGISNE VEVKRRDKEV  1560
AVTGKTTLPD NDDDWIETPE LQEDDGEASS SGRSFQYKDY DDDEVMAPMD DFDDGGESSK  1620
LVGRGEFSLH SDDEYEEEEE EEEEEEEEED MNTKMNANVV DEDEDYINDD SYGTREQPVI  1680
SNNDAARKRF AFDDPDLTSS SSSDYR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0381s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052390.0AB005239.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MLN1.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279558.10.0homeobox-DDT domain protein RLT2
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLR0EUK20.0R0EUK2_9BRAS; Uncharacterized protein
STRINGCagra.0381s0009.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96012530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator