PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0381s0008.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 399aa    MW: 43027.2 Da    PI: 6.7008
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0381s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.24.3e-29157211156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          kp+++WtpeLH++Fv+aveqL G +kA+P++ile+m+vk+Lt+++v+SHLQkYR++
  Cagra.0381s0008.1.p 157 KPKVDWTPELHRKFVQAVEQL-GVDKAVPSRILEIMNVKSLTRHNVASHLQKYRSH 211
                          79*******************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.18154213IPR017930Myb domain
SuperFamilySSF466896.45E-20155214IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28155214IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-26157211IPR006447Myb domain, plants
PfamPF002492.6E-8160209IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MLTVSPAPLI GNNSTNSKDT FMAADFADFT TGDLPDFTTV GDFSDELLDG IDYYDDLFIG  60
FDGEDVLPDL DMDSEILAEY SGSGRDEEQE MEGNTSTASE TSEREGGGGG GFCKQELGGG  120
GGGGGDGGVR DKTVRRGKRK GKKSKNCSSD DNDIKKKPKV DWTPELHRKF VQAVEQLGVD  180
KAVPSRILEI MNVKSLTRHN VASHLQKYRS HRKHLLAREA EAASWNLRRH ATVAVAGVGG  240
GKKPWTAPAL GYPPHVAPMH HGHFRPLHVW GHPTWPNKHK PNTPVSAHRT YPIPAVAAAP  300
STAWPAHPPY WHQQPLYPQG YGMATSNHST IGVPTTRPLG PTNPPIDIHP SNESIDAAIG  360
DVITKPWLPL PLGLKPPSVD GVMTELQRQG VSDVPPLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-19155209357ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRGKRKGKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that functions with GLK1 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0381s0008.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0624900.0AB062490.1 Arabidopsis thaliana mRNA for GPRI2, complete cds.
GenBankAY0267730.0AY026773.1 Arabidopsis thaliana golden2-like transcription factor (GLK2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279640.10.0transcription activator GLK2
SwissprotQ9FFH00.0GLK2_ARATH; Transcription activator GLK2
TrEMBLR0GN100.0R0GN10_9BRAS; Uncharacterized protein
STRINGCagra.0381s0008.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22092773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44190.10.0GOLDEN2-like 2
Publications ? help Back to Top
  1. Leister D,Kleine T
    Definition of a core module for the nuclear retrograde response to altered organellar gene expression identifies GLK overexpressors as gun mutants.
    Physiol Plant, 2016. 157(3): p. 297-309
    [PMID:26876646]
  2. Nagatoshi Y, et al.
    GOLDEN 2-LIKE transcription factors for chloroplast development affect ozone tolerance through the regulation of stomatal movement.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(15): p. 4218-23
    [PMID:27035938]
  3. Han XY, et al.
    GOLDEN2-LIKE transcription factors coordinate the tolerance to Cucumber mosaic virus in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2016. 477(4): p. 626-632
    [PMID:27346129]
  4. Ni F, et al.
    Turnip Yellow Mosaic Virus P69 Interacts with and Suppresses GLK Transcription Factors to Cause Pale-Green Symptoms in Arabidopsis.
    Mol Plant, 2017. 10(5): p. 764-766
    [PMID:27964999]
  5. Bastakis E,Hedtke B,Klermund C,Grimm B,Schwechheimer C
    LLM-Domain B-GATA Transcription Factors Play Multifaceted Roles in Controlling Greening in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 582-599
    [PMID:29453227]
  6. Zubo YO, et al.
    Coordination of Chloroplast Development through the Action of the GNC and GLK Transcription Factor Families.
    Plant Physiol., 2018. 178(1): p. 130-147
    [PMID:30002259]