PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0380s0001.2.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Trihelix

Protein Properties

Length: 297aa MW: 33848.8 Da PI: 4.6245

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0380s0001.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	32.4	2.3e-10	19	96	2	79
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 Wt + l L++ +e + +++ + ++W +s+++ ++r+ +qC+ kw++l +y +ik++e++ ++s + Cagra.0380s0001.2.p 19 WTVKDCLILVNEIAAVEADCSNALSSFQKWTMISENCNILDVRRTLNQCRRKWDSLLSDYNQIKKWESRYGGSARSYW 96 99999999999999*****************************************************99754444455 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.2E-9	18	98	No hit	No description
PROSITE profile	PS50090	6.632	19	75	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MDEGSSGSRR LRSQVAPDWT VKDCLILVNE IAAVEADCSN ALSSFQKWTM ISENCNILDV 60 RRTLNQCRRK WDSLLSDYNQ IKKWESRYGG SARSYWSLST EKRKLLNLPG NVDNELFESI 120 NAVVMIQDDK AGTESDSDPE AQDLVDVTTE LDFVGSKRSR QRTTVTKEIP QQKTKKKEPQ 180 TYRVQENTQQ KPTKATHQNI NMEEKKKTVE EISTDEEEEE TMNIEEDVEV MEVMEAKLSY 240 KIDLIHAIAG RNLAKDNDTG DDISINDKLK YGRQQGDELI SCLSEIVNTL SRLREV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	161	KRSRQR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0380s0001.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006284106.2	0.0	trihelix transcription factor ASR3 isoform X2
TrEMBL	R0GJH3	0.0	R0GJH3_9BRAS; Uncharacterized protein
STRING	Cagra.0380s0001.1.p	0.0	(Capsella grandiflora)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	1e-142	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Cagra.0380s0001.2.p