PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0352s0013.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

FAR1

Protein Properties

Length: 811aa MW: 93044.5 Da PI: 6.8304

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0352s0013.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.9	4.1e-24	57	142	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYA++vGF +++++s++skr+g++++ + Cs+ g+++e++ + ++r+ +tgCka l++k+++d+kw+++++++eHnHe++p Cagra.0352s0013.1.p 57 FYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTKREKSAA----INPRSCPKTGCKAGLHMKRKEDEKWVIYNFVKEHNHEICP 142 9*************************************998877....99*********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-21	57	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.8E-22	224	316	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.299	502	540	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.2E-6	512	537	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.1E-7	515	542	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 811 aa Download sequence Send to blast
MDVEDVEIDL LTTSGNVDEF CEASTSGNVA PSLEQYANVG EPGNGMEFES KEAVYYFYRE 60 YARSVGFGIT IKASRRSKRS GKFIDVKIAC SRFGTKREKS AAINPRSCPK TGCKAGLHMK 120 RKEDEKWVIY NFVKEHNHEI CPDDFYISIR GKNKPAVSLA NQKKGLQLAL EKEDLKLLLD 180 HFMDMQDKQP GFFYAVDFNS ENHVRNVFWL DAKAKHDYRS FSDVVLFDTF YVRSRYRIPF 240 APFIGVSHHC QYVLLGCVLI GEESESTYSW LFRTWLKAVG GQAPGVMITD QDKLLSDIVV 300 EVLPTARHFF CLWNVLSKIP EMLNPFLSED DGFMESFWNC VNSSWIDEQF ERRWSNVISK 360 FELNENEWVQ LLFRDRKKWV PLYFHGICLA GLSGPERPGS IASHFDNYMN AEATFKDFFE 420 LYKQFLQYRC DVEAKVDLES QSKQPTLRST LAFEKQLSLI YTDAAFKKFQ AEVLGVVSCQ 480 PRKEREDGTT VIFRVEDFEE RQNLSVVLNK ELLNVYCSCH LFEYHGFLCK HAILVLQNSD 540 VSCIPSQYIL KRWSKRCNNI EGKKEKCVYI HNRMARFDDL CRRFVKLGEV ASLSDEAYKT 600 ALKLLEETKK HCVNNSPKFP SEPDKLMTGV CVSIGLESEG MLESTSKLSK KKKIQKKRKV 660 YCRPEDATNR SEELQQETEQ VSPRAPAFEN CYIPQADMEE TEQRSSATNL GVYYSSHQTI 720 QGFSSVTSIQ DGYYGHPPTI KAMGSMYSFH GRMSQYETQS SIQGAFQGQT SFRGSAIRGC 780 YDIEETLHDD MTMESSQFQG SGPSNRRFSN *

Sequence ? help Back to Top

Protein Sequence Length: 811 aa Download sequence Send to blast

MDVEDVEIDL LTTSGNVDEF CEASTSGNVA PSLEQYANVG EPGNGMEFES KEAVYYFYRE  60
YARSVGFGIT IKASRRSKRS GKFIDVKIAC SRFGTKREKS AAINPRSCPK TGCKAGLHMK  120
RKEDEKWVIY NFVKEHNHEI CPDDFYISIR GKNKPAVSLA NQKKGLQLAL EKEDLKLLLD  180
HFMDMQDKQP GFFYAVDFNS ENHVRNVFWL DAKAKHDYRS FSDVVLFDTF YVRSRYRIPF  240
APFIGVSHHC QYVLLGCVLI GEESESTYSW LFRTWLKAVG GQAPGVMITD QDKLLSDIVV  300
EVLPTARHFF CLWNVLSKIP EMLNPFLSED DGFMESFWNC VNSSWIDEQF ERRWSNVISK  360
FELNENEWVQ LLFRDRKKWV PLYFHGICLA GLSGPERPGS IASHFDNYMN AEATFKDFFE  420
LYKQFLQYRC DVEAKVDLES QSKQPTLRST LAFEKQLSLI YTDAAFKKFQ AEVLGVVSCQ  480
PRKEREDGTT VIFRVEDFEE RQNLSVVLNK ELLNVYCSCH LFEYHGFLCK HAILVLQNSD  540
VSCIPSQYIL KRWSKRCNNI EGKKEKCVYI HNRMARFDDL CRRFVKLGEV ASLSDEAYKT  600
ALKLLEETKK HCVNNSPKFP SEPDKLMTGV CVSIGLESEG MLESTSKLSK KKKIQKKRKV  660
YCRPEDATNR SEELQQETEQ VSPRAPAFEN CYIPQADMEE TEQRSSATNL GVYYSSHQTI  720
QGFSSVTSIQ DGYYGHPPTI KAMGSMYSFH GRMSQYETQS SIQGAFQGQT SFRGSAIRGC  780
YDIEETLHDD MTMESSQFQG SGPSNRRFSN *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0352s0013.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006293361.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X1
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	R0HA26	0.0	R0HA26_9BRAS; Uncharacterized protein
STRING	Cagra.0352s0013.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	0.0	FAR1-related sequence 2

Link Out ? help Back to Top
Phytozome	Cagra.0352s0013.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]