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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cagra.0342s0029.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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| Family |
GRAS |
| Protein Properties |
Length: 436aa MW: 48708.6 Da PI: 4.9934 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cagra.0342s0029.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 311.5 | 1.9e-95 | 32 | 425 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.....fse 86
++lLl+cA+a++s+d +laq++++ l++lasp+gd++qRl++ f++AL +r a++++ ++ l++ + +++ s ++l+ +++ f++
Cagra.0342s0029.1.p 32 EQLLLHCANAIESNDVTLAQQIIWVLNNLASPEGDSTQRLVSSFLRALISRAASKSP-AFAFLSVAAPAPSVSRKTLHRFSVielaeFVD 120
79***************************************************9555.44455555555555444444444444499*** PP
GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg.....skeeleetgerLakfA 169
++P+++f++++aN aIl+aveg + vHi+D+++++++Q p+L++a+a++ + pp l++T+++s +++ ++ee+g++L +fA
Cagra.0342s0029.1.p 121 LTPWHRFGFIAANAAILDAVEGYSSVHIVDLSLTHCMQVPTLIDAMANKLhkQLPPLLKLTVIVSDDESyppplLGVSYEELGSKLVNFA 210
***********************************************998656699*********8888999888999************ PP
GRAS 170 eelgvpfefnvl...vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnse 251
++ ++ +ef+++ +++ l++l +e+Lr +p +Eal+Vn++++lh+++de++++ s +r+ +Lk +++l+P++v++++++ad +s+
Cagra.0342s0029.1.p 211 TTRNIAMEFRIIsssYSDGLSSL-VEQLRNDPfvfNEALVVNCHMMLHYIPDETLTSISnpPRTVFLKELRDLNPTIVTLIDEDADFTST 299
***********966555566666.9*****************************99888899**************************** PP
GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
s+ r+ + +y++ +d+ ++ l r se+r+++E+ ++++i nv+a+egaer+er e +++W er++ea F v l+e +a++ak++l
Cagra.0342s0029.1.p 300 SLISRLRSLYNYMWIPYDTADVFLTRGSEQRQWYEAD-VSWKIDNVIAKEGAERVERLELKSRWFERMREAKFAGVGLGEAVATEAKTML 388
*************************************.9*************************************************** PP
GRAS 342 rkvk.sdgyrve....eesgslvlgWkdrpLvsvSaW 373
++++ ++g++ e ++ + lvl+Wk++++v++SaW
Cagra.0342s0029.1.p 389 EEHAtGWGMKREvdedDDVERLVLTWKGHSVVFASAW 425
****999988775543446889*************** PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 436 aa
Download sequence Send
to blast |
MNTTRILNPT TRPLWPGFSS SKSLCGDANC MEQLLLHCAN AIESNDVTLA QQIIWVLNNL 60
ASPEGDSTQR LVSSFLRALI SRAASKSPAF AFLSVAAPAP SVSRKTLHRF SVIELAEFVD 120
LTPWHRFGFI AANAAILDAV EGYSSVHIVD LSLTHCMQVP TLIDAMANKL HKQLPPLLKL 180
TVIVSDDESY PPPLLGVSYE ELGSKLVNFA TTRNIAMEFR IISSSYSDGL SSLVEQLRND 240
PFVFNEALVV NCHMMLHYIP DETLTSISNP PRTVFLKELR DLNPTIVTLI DEDADFTSTS 300
LISRLRSLYN YMWIPYDTAD VFLTRGSEQR QWYEADVSWK IDNVIAKEGA ERVERLELKS 360
RWFERMREAK FAGVGLGEAV ATEAKTMLEE HATGWGMKRE VDEDDDVERL VLTWKGHSVV 420
FASAWAPINR VADLI*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
