PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0334s0011.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 354aa    MW: 39748.1 Da    PI: 7.6189
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0334s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.8e-181562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEde+l+++++++G g+W+++++  g+ R++k+c++rw +yl
  Cagra.0334s0011.1.p 15 KGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 62
                         678*******************************************97 PP
2Myb_DNA-binding45.61.7e-1468111146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
  Cagra.0334s0011.1.p  68 RGAFSQDEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 111
                          89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-28765IPR009057Homeodomain-like
PROSITE profilePS5129425.6661066IPR017930Myb domain
SuperFamilySSF466898.8E-3013109IPR009057Homeodomain-like
SMARTSM007171.1E-131464IPR001005SANT/Myb domain
PfamPF002494.4E-161562IPR001005SANT/Myb domain
CDDcd001675.14E-121862No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2566117IPR009057Homeodomain-like
PROSITE profilePS5129420.79967117IPR017930Myb domain
SMARTSM007179.1E-1367115IPR001005SANT/Myb domain
PfamPF002492.0E-1368112IPR001005SANT/Myb domain
CDDcd001674.79E-970110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MMGRHSCCYK QKLRKGLWSP EEDEKLLRYI TKYGHGCWSS VPKQAGLQRC GKSCRLRWIN  60
YLRPDLKRGA FSQDEENLII ELHAVLGNRW SQIAAQLPGR TDNEIKNLWN SCLKKKLRLR  120
GIDPVTHKLL TEIESGTDDK PKPVEKSQQQ TYHHLVETEG SSSTTTCSTT TNQNNNNNNN  180
TDHLYTGNFG FQRLSIENGS RTATGSDLGI WIPQTGRNHH HHNHVDENVP SAVVLPGSMF  240
SSGLTGYRSS NLGLIELENS FSTGPMMTEQ QQIQESNYNN NNNSSTFFGA GNVNWGLTMD  300
ENQIPFAISN HSNSSLYSDI KSETNFFGTE ATNVGMWPIC NQLQAQQHAY GHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00427DAPTransfer from AT4G01680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0334s0011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0545750.0AY054575.1 Arabidopsis thaliana Unknown protein (At4g01680; T15B16.4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288075.10.0transcription repressor MYB6 isoform X1
SwissprotQ8VZQ25e-85MYB61_ARATH; Transcription factor MYB61
TrEMBLR0HBF40.0R0HBF4_9BRAS; Uncharacterized protein
STRINGCagra.0334s0011.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.10.0myb domain protein 55
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]