PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0327s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family FAR1
Protein Properties Length: 558aa    MW: 65411 Da    PI: 6.557
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0327s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.61.5e-16102185290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                           Y++++ e GF+vrk++ kk+  n+e ++  +vCskeg+r+e k k   +  +++ tr+gC+a+++   +k+ +++  +++++HnH+l 
  Cagra.0327s0005.1.p 102 AYKKFGGEHGFNVRKQQRKKK--NNELVRLLYVCSKEGFRKEPKIK---TCYSQPITRCGCEARMTCYVQKTRRFKNVSFNQDHNHDLI 185
                          59*************987776..8889***************9877...8999*********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-13102185IPR004330FAR1 DNA binding domain
PfamPF105517.9E-29263362IPR018289MULE transposase domain
PROSITE profilePS509669.025526557IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MESNHEIVLV DQNESRLQVS GEPGFLSQKQ FEFQPEEIYD SVSEDEASVN EFKEKEEDDI  60
ANKEDYVKIE EISTLQPNTE NEKKNELCIG MEFSSDETAY DAYKKFGGEH GFNVRKQQRK  120
KKNNELVRLL YVCSKEGFRK EPKIKTCYSQ PITRCGCEAR MTCYVQKTRR FKNVSFNQDH  180
NHDLISRISA KAIVEMMSRE VGGRGNLGFL EKHYRNYIYR KRMGKCIIYL FFYSMQLDED  240
DMITNIFWAD DRSISDYNLF GDIVCFDTTY KTNQYDRPFA PFVGVNHHKQ TVVFGAALLY  300
DETTESYKWL FETFFGAMSG KQPKQFLQTN LQQYQTAAMS NAIVKVFPEI KHRLCVWNIY  360
QNAAKKLSHV FHGPGHSTID FGKCVYDHEE EVGWLLAWSN MLEKHNLREN KWLQNVTQRS  420
ESMNNILKRY LKSSYDLLSF FEHYERVFDD RRYNELIADF KIMHTSSVLS TTVEMLQHAE  480
EVYTPEIFCL FQKQYTVTGD YVAKNVSKSE MVYEYKVSYR GGPQEYLVNY DAINQAIQCS  540
CMKYSFAGIL CRHALKV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0327s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010445346.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_022552503.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLR0EZH30.0R0EZH3_9BRAS; Uncharacterized protein
STRINGCagra.0327s0005.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-88FAR1-related sequence 5