PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0316s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 436aa    MW: 47142.4 Da    PI: 6.6627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0316s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.47.8e-063243621154
                          HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           R +++ ++++ L++l+ +      +K + a++L +A+eYIk L
  Cagra.0316s0001.1.p 324 VRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 362
                          5778999***********98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.659313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0067319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-11323377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.69E-6323367No hitNo description
Gene3DG3DSA:4.10.280.108.1E-10327371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MRASSIESGG SAVFHDKLHH HHHSLASTTD HHLQMIGLGL SSQSPVDQWN QSLLRGDSKA  60
ETSFGVMLQE NLNLDASSNA NANTTSSTSS YQLQESDSSH HQALWRDPQT DFKPQTIMTN  120
NNRGFFLDHQ FSPHGSSSTD SSTVTCQGFA VDNSSNNSLY AAAATTTPNS SSGMFHQHQL  180
ASGFGSSDQQ PPRNHQQSSL GYSQYGSSTG NYDQMASALP STWFLRASPP KPHSPLRFSN  240
NATFWNPAAA GNTGPPPPHD ASSNFFPPLQ PPQIHAPSFD EQPKNISETR DSSNNEVKRG  300
GGGDQPAAKR TKSEAASPSP ALKVRKEKMG DRIAALQQLV SPFGKTDAAS VLSEAIEYIK  360
FLHQQVSALS NPYMKSGASL QHQQSDQHQP NEVEVSEEPD LRSRGLCLVP VSSTFPVTHD  420
TTVDFWTPTF GGTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0316s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180540.0AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
GenBankBT0085800.0BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297611.20.0transcription factor bHLH123
SwissprotQ8GXT30.0BH123_ARATH; Transcription factor bHLH123
TrEMBLR0HLE70.0R0HLE7_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.0316s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]