PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0301s0027.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Trihelix | ||||||||
Protein Properties | Length: 218aa MW: 24532.6 Da PI: 4.8375 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 27.3 | 9.5e-09 | 1 | 36 | 50 | 85 |
trihelix 50 Ckekwenlnkrykkikegekkrtsessstcpyfdql 85 C+++w+nl+++ykkike+e++ ++e++s +++ +++ Cagra.0301s0027.1.p 1 CRKRWSNLAGDYKKIKEWESQVKEETESYWVMRNDV 36 ******************************999886 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050777 | Biological Process | negative regulation of immune response | ||||
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
CRKRWSNLAG DYKKIKEWES QVKEETESYW VMRNDVRREK KLPGFFDKEV YDIVDGGVIP 60 PAVPTLALGL APASEEGLLP DLDRPNELNS TPVPISVSDV VDKEKQEACK ADQGRLKEKH 120 PEGGNVEGGW TSQEERKRKR TSTSEKEEEE DGEGETKKMQ NQLIEILERN GQLLAAQLEV 180 QNLNLKLDRE QRKDHGDSLV AVLNKLADAV TKIADKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00288 | DAP | Transfer from AT2G33550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0301s0027.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY065364 | 0.0 | AY065364.1 Arabidopsis thaliana unknown protein (At2g33550) mRNA, complete cds. | |||
GenBank | AY096389 | 0.0 | AY096389.1 Arabidopsis thaliana unknown protein (At2g33550) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294638.1 | 1e-151 | trihelix transcription factor ASR3 isoform X1 | ||||
Swissprot | Q8VZ20 | 1e-124 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | R0FXU4 | 1e-150 | R0FXU4_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0301s0027.1.p | 1e-156 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6557 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-118 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0301s0027.1.p |
Publications ? help Back to Top | |||
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