PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0263s0023.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family FAR1
Protein Properties Length: 788aa    MW: 90647.9 Da    PI: 7.1211
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0263s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.53e-2057131189
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          ++Yn+YA ++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC+a ++v+++++gkw+++++++eHnHel
  Cagra.0263s0023.1.p  57 EYYNAYAIRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 131
                          69**************************************876..............589***************************98 PP
2FAR167.63.1e-21224300191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fY++YA+ vGF+vr+ +  +sk +g+it+r+fvCs+eg+++++              r+gC a +++k++++g w v++l+++HnH+l 
  Cagra.0263s0023.1.p 224 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSREGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLE 299
                          6***************************************9994..............799***************************97 PP

                 FAR1  91 p 91 
                          p
  Cagra.0263s0023.1.p 300 P 300
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.9E-1657131IPR004330FAR1 DNA binding domain
PfamPF031011.0E-16224300IPR004330FAR1 DNA binding domain
PfamPF105511.3E-24399490IPR018289MULE transposase domain
PROSITE profilePS5096610.361673709IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-7681706IPR007527Zinc finger, SWIM-type
SMARTSM005753.1E-8684711IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MDNADTELNS FNNMVAKAYP VRVLHHNNNG ISEDEEGGSG VEPYVGLEFD TAEEAREYYN  60
AYAIRTGFKV RTGQLYRSRT DGTVSSRRFV CSKEGFQLNS RTGCTAFIRV QRRDTGKWVL  120
DQIQKEHNHE LGGEGQVEET TPRPSRAPAP TKLGVTVNPH RPKMKVVDES ERGTRSCPGG  180
FKRFKGGGEG EVSDEHHQAQ QPKAVNGTEP YAGLEFGSAN EACQFYQAYA EVVGFRVRIG  240
QLFRSKVDGS ITSRRFVCSR EGFQHPSRMG CGAYMRIKRQ DSGGWIVDRL NKDHNHDLEP  300
GKKNDAGMKK ITDDGTGGLD SVDLIELNDF GNNHIKKTRE NRIDKEWYPL LLDYFQSRQT  360
EDMGFFYAVE LDVNNGSCMS IFWADSRARF ACSQFGDTVV FDTSYRKGNY AVPFATIIGF  420
NHHRQPVLLG CAMVADESKE AFLWLFQTWL RAMSGRRPRS IVADQDLPIQ QALVQVFPGA  480
HHRYSAWQMR EKEQENLRPF PSEFKYEYEK CIYQTQTTVE FDSVWNALIN KYGLRDDIWL  540
REIYEQRENW VPAYLRASFF AGIPINGTIE PFFGASLDAL TPLREFISRY EQALEQRREE  600
ERKEDFNSYN LQPFLQTKEP VEEQCRRLYT LTVFRIFQNE LVQSYNYLCL KTYEEGAISR  660
FLVRKCGNES EKHAVTFSAS NLNSSCSCQM FEHEGLLCRH ILKVFNLLDI RELPSRYILH  720
RWTKNAEFGF VRDMESGVSA QDLKALMVWS LREAASKYIE FGTSSLEKYK LAYEIMREGG  780
KKLCWQR*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0263s0023.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0686550.0AC068655.3 Genomic Sequence For Arabidopsis thaliana Clone F17K4 From Chromosome V, complete sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286363.10.0protein FAR1-RELATED SEQUENCE 12 isoform X1
SwissprotQ3E7I50.0FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12
TrEMBLR0FBV10.0R0FBV1_9BRAS; Uncharacterized protein
STRINGCagra.0263s0023.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57302239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.10.0FAR1-related sequence 12
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]