PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0248s0103.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CAMTA
Protein Properties Length: 1013aa    MW: 113094 Da    PI: 6.5394
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0248s0103.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1188.37.3e-59191362118
                 CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                          l+e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+e+
  Cagra.0248s0103.1.p  19 LSEaQHRWLRPAEICEILRNHQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGED 108
                          45559************************************************************************************* PP

                 CG-1  91 nptfqrrcywlLeeelekivlvhylevk 118
                          n++fqrrcyw+Le++l +iv+vhylevk
  Cagra.0248s0103.1.p 109 NENFQRRCYWMLEQDLMHIVFVHYLEVK 136
                          *************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143786.27515141IPR005559CG-1 DNA-binding domain
SMARTSM010763.6E-8718136IPR005559CG-1 DNA-binding domain
PfamPF038598.0E-5221135IPR005559CG-1 DNA-binding domain
SuperFamilySSF812963.85E-13422506IPR014756Immunoglobulin E-set
SuperFamilySSF484036.53E-19603714IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029719.28603714IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.4E-18604715IPR020683Ankyrin repeat-containing domain
PfamPF127962.3E-7608680IPR020683Ankyrin repeat-containing domain
CDDcd002042.06E-14609712No hitNo description
PROSITE profilePS500888.71620652IPR002110Ankyrin repeat
SMARTSM002483200620649IPR002110Ankyrin repeat
PROSITE profilePS5008810.873653685IPR002110Ankyrin repeat
SMARTSM002480.0029653682IPR002110Ankyrin repeat
SMARTSM000150.32828850IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525407.97E-8829878IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.858830858IPR000048IQ motif, EF-hand binding site
PfamPF006120.0019830849IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0092851873IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.304852876IPR000048IQ motif, EF-hand binding site
PfamPF006124.4E-4854873IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1013 aa     Download sequence    Send to blast
MADRGSFGFA PRLDIKQLLS EAQHRWLRPA EICEILRNHQ KFHIASEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEDNE NFQRRCYWML  120
EQDLMHIVFV HYLEVKGNRM STGGTKENHS NSLSGTGSVN VDSTATRSSI LSPLCEDADS  180
GDSHQASSSL QPNPELQIMH HQNASTMNSF NTSSVLGNRD GWTSAPAIGI VPHVHGNRVK  240
ESDSQRSGSL LTAEHLRNPL QNQVNWQIPV QESLPLQKWP MDSHSCMTDA TDLALFGQRP  300
HGNFGTFSSL LGCQNQQPSS FQAPFTNNEA AYIPKLGPED LIYEASANQT LPLRKALLKT  360
EDSLKKVDSF SRWVSKELGE MEDLQMQSSS GGIAWTSVEC ETAAAGSSLS PSLSEVQRFT  420
MIDFWPKWTQ TDSEVEVMVI GTFLLSPKEV TSYSWSCMFG EVEVPAEILV DGVLCCHAPP  480
HEVGRVPFYI TCSDRFSCSE VREFDFLPGS TRKLNATDVY GANTIEASLH LRFENLLALR  540
SSVQEHHIFE NVGQKRRKIS KIMLLMDEKE SLLPGTIEKD STELEAKERL IREEFEDKLY  600
LWLIHKVTEE GKGPNILDEV GQGVLHLAAA LGYDWAIKPI LAAGVSINFR DANGWSALHW  660
AAFSGREDTV AVLVSLGADA GALADPSPEH PLGKTAADLA YGNGHRGISG FLAESSLTSY  720
LEKLTVDAKE NSSADSSGAK AVLTVAERTA TPMSYGDVPE TLSMKDSLTA VLNATQAADR  780
LHQVFRMQSF QRKQLSELGG DNEFDISDEL AVSFAAAKTK KPGHSNGAVH AAAVQIQKKY  840
RGWKKRKEFL LIRQRIVKIQ AHVRGHQVRK QYRAIIWSVG LLEKIILRWR RKGSGLRGFK  900
RDTITKPPEP VCPAPQEDDY DFLKEGRKQT EERLQKALTR VKSMAQYPEA RAQYRRLLTV  960
VEGFRENEAS SSSALRNNNS NTEEAANYNE EDDLIDIDSL LDDDTFMSLT FE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0248s0103.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4938110.0AB493811.1 Arabidopsis thaliana At5g64220 mRNA for hypothetical protein, partial cds, clone: RAAt5g64220.
GenBankAK2294030.0AK229403.1 Arabidopsis thaliana mRNA for Calmodulin-binding transcription activator 2, complete cds, clone: RAFL16-66-C08.
GenBankBT0108740.0BT010874.1 Arabidopsis thaliana At5g64220 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023637278.10.0calmodulin-binding transcription activator 2 isoform X2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLR0EUM40.0R0EUM4_9BRAS; Uncharacterized protein
STRINGCagra.0248s0103.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]