PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0239s0048.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 281aa MW: 30510.2 Da PI: 4.5493 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.6e-18 | 84 | 133 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g Cagra.0239s0048.1.p 84 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 133 69****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.1E-38 | 84 | 147 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-21 | 84 | 141 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.222 | 84 | 141 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-31 | 84 | 142 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-12 | 84 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 85 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.31E-31 | 85 | 143 | No hit | No description |
PRINTS | PR00367 | 2.3E-10 | 107 | 123 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MERHINNNIE SRSVPQATSS LSSSPTTSSS SSSSSSTNSN FPHHEEDNSK RKASRRSLAE 60 DDDQTVGGGG GKKRKISGGD KHPTYRGVRM RSWGKWVSEI REPRKKSRIW LGTYPTAEMA 120 ARAHDVAALA IKGTTAYLNF PELSGELPRP VTNSPKDIQA AASLAAVNWQ DPVNDADDSE 180 EAAELAEAEP SPAAVVFSSD TSTTTTTQSQ ESSEASCAST SCSTDKDNEE EKLFDLPDLF 240 ADENEMMIRN DAFCYYSSTW QLCGADAGFR LEEPFFCLND * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 79 | 141 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0239s0048.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254605 | 0.0 | AC254605.1 Capsella rubella clone CAP23-M05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023640073.1 | 1e-157 | ethylene-responsive transcription factor ERF034 | ||||
Swissprot | Q8LBQ7 | 1e-125 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | R0HQJ8 | 1e-156 | R0HQJ8_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0239s0048.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 2e-97 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0239s0048.1.p |
Publications ? help Back to Top | |||
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