PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0239s0022.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 397aa    MW: 43202.4 Da    PI: 9.4587
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0239s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix681.9e-2171162187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                          +W+ +e+ aLi+++r+++ +l+rg+lk+++Weev++++     +   +++++qC++k+e+l+kry+ + +++++   ++  s++++f+++
  Cagra.0239s0022.1.p  71 CWSLEETIALIDGYRDKWYDLNRGNLKANHWEEVAEAVgascPDVTPKKTAVQCRHKMEKLRKRYRTEIQRARSVpVARFISSWVHFKRM 160
                          7************************************988778888899*************************977999********** PP

             trihelix  86 ea 87 
                          ea
  Cagra.0239s0022.1.p 161 EA 162
                          85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-1970163No hitNo description
PROSITE profilePS500906.21472132IPR017877Myb-like domain
SMARTSM005951.1E-1579168IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MSDPDSPMNQ DPIADPSPVR IESSPRALVP PPLSSSAQDD DSAEPASVAD LKSASVPVAA  60
AKNSRRLPPP CWSLEETIAL IDGYRDKWYD LNRGNLKANH WEEVAEAVGA SCPDVTPKKT  120
AVQCRHKMEK LRKRYRTEIQ RARSVPVARF ISSWVHFKRM EAMENRPEIK QGNESGEEDH  180
DDGNYTARYH FKNGGGGGSV ARTTPRFFNR NGTAGSGGGG GSGSSGGIRI RIPTGVSIAQ  240
AGPRFPGKID QKYTASPGSG MSSNPRLGRG LGAGGSNYSA RVARLPEGGG GKRGRDMMMK  300
TEEDDENDND NDPMVEIASA IKLLGDTLLR TEQTRMEMTK EIEAMRRETE MKRTKMILES  360
QQRLVEAFAK TIAENTEEKK KKARRMSSSS FAAADS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0239s0022.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293533.10.0trihelix transcription factor ASIL2
TrEMBLR0FV430.0R0FV43_9BRAS; Uncharacterized protein
STRINGCagra.0239s0022.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-176Trihelix family protein