PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0228s0035.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 186aa    MW: 20099.5 Da    PI: 4.5187
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0228s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-171464255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr+++++ +Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  Cagra.0228s0035.1.p 14 LYKGVRQRRNSDKWVSEIREPR----KpNRIWLGTFSTPEMAAIAYDVAALALKG 64
                         69******************94....478***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-111364IPR001471AP2/ERF domain
CDDcd000189.21E-291374No hitNo description
PROSITE profilePS5103221.1011472IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-271473IPR001471AP2/ERF domain
SMARTSM003808.8E-321478IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-201474IPR016177DNA-binding domain
PRINTSPR003671.7E-71526IPR001471AP2/ERF domain
PRINTSPR003671.7E-75474IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MQGTSKDNGG RHPLYKGVRQ RRNSDKWVSE IREPRKPNRI WLGTFSTPEM AAIAYDVAAL  60
ALKGTQAELN FPNSVSSLPV PASMSPGDIQ AAAASAAAAF GAARDAIVMA NHNSETSGVA  120
SMNASYEHTN MNEFMDDDLV FDMPNVLMNM AEGMLLSPPR PPAFDTTYYD VDGFTGGDDY  180
LWNFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-13774274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0228s0035.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069190.0AC006919.6 Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence.
GenBankAY5608670.0AY560867.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g36450) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ4466040.0DQ446604.1 Arabidopsis thaliana clone pENTR221-At2g36450 AP2 domain-containing protein (At2g36450) mRNA, complete cds.
GenBankDQ6530450.0DQ653045.1 Arabidopsis thaliana clone 0000012250_0000008884 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295828.11e-135ethylene-responsive transcription factor ERF024
SwissprotQ9SJR01e-102ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLR0G0M21e-134R0G0M2_9BRAS; Uncharacterized protein
STRINGCagra.0228s0035.1.p1e-135(Capsella grandiflora)
STRINGXP_006295828.11e-135(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.16e-94ERF family protein