PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0154s0026.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 462aa    MW: 51865.7 Da    PI: 4.8465
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0154s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33e-07392447147
                          TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                          r+ WT eE+e l+ +v+++  +      W++I ++      ++Rt+ ++k++w++ 
  Cagra.0154s0026.1.p 392 RLLWTFEEEEMLKVGVEKFAAEanknmPWRKILEMGEkvfhETRTPSDLKDKWRNM 447
                          677******************9**********99877*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.6E-9386452IPR009057Homeodomain-like
PROSITE profilePS500907.84387448IPR017877Myb-like domain
SuperFamilySSF466891.72E-9390449IPR009057Homeodomain-like
SMARTSM007170.0017391450IPR001005SANT/Myb domain
CDDcd116602.16E-10395448No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MKMRAKSILV RSSPNSLDPY PSLPSLPDDE ANDLSTTQCD TDVDIVPDTF VERDVPPKKR  60
HCLGTSVTTD RGVSLEPLLN LDACIVCEVA DERVSRCCGV DCLLSFHGEC LYADLGDNSE  120
DLANPFCPYC WLKILTLKSE TLREKAVNAE KAVFKYLDKE LKSRGEDRTL SGSGNGNREH  180
SVDSTDIVSN QELQGEKDGC SSKEEQVQVE KDFDISRGEN ISLIEETDQP EVDQGKVGTG  240
KVIDEIGASE REERIALEKF QDAEDENNDE TAKDQTRVRT GAGKRGYVST FLSMQESFSG  300
KEQDQLQQND KQRRRRRRRG IELNTIDSES DTSSKGSSNE RNGEDVTEQV TLSAPVTSPS  360
GKIYNQQATT RVVAKSKTVR DISFFNKDQK RRLLWTFEEE EMLKVGVEKF AAEANKNMPW  420
RKILEMGEKV FHETRTPSDL KDKWRNMVGA RLGQKKDKTA H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309315DKQRRRR
2311317QRRRRRR
3312318RRRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0154s0026.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937351e-133AB493735.1 Arabidopsis thaliana At5g03780 mRNA for hypothetical protein, partial cds, clone: RAAt5g03780.
GenBankAK1178771e-133AK117877.1 Arabidopsis thaliana At5g03780 mRNA for myb like protein, complete cds, clone: RAFL19-05-H14.
GenBankAY5195431e-133AY519543.1 Arabidopsis thaliana MYB transcription factor (At5g03780) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287565.20.0uncharacterized protein LOC17882878
TrEMBLR0HA350.0R0HA35_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.0154s0026.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327