PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0133s0118.3.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 362aa    MW: 39934.4 Da    PI: 4.9324
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0133s0118.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573941.6e-2973163398
               DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                          ++rlw++ De+v+L+G+++++++tg++  +d  af+e++k+ i++k+sk+qlv+Ki++LK Kf+++  k     +psf++++d+++f+ls
  Cagra.0133s0118.3.p  73 SKRLWTKADELVILKGIVNYQKDTGVDNLSDSAAFFEYIKDDIDAKFSKDQLVNKIKKLKFKFRDNLVK-----KPSFANSQDSETFDLS 157
                          79***************************************************************9999.....9*************** PP

               DUF573  93 kkiWgs 98 
                          + iWg+
  Cagra.0133s0118.3.p 158 MAIWGK 163
                          ****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.2E-2374162IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MVNKKRLCSG DGFSETYTCD LEFRLNNSNG FLPPSPPDSP VLNSPDNLDS SNATLLKTRK  60
KRKATLPSYA PDSKRLWTKA DELVILKGIV NYQKDTGVDN LSDSAAFFEY IKDDIDAKFS  120
KDQLVNKIKK LKFKFRDNLV KKPSFANSQD SETFDLSMAI WGKDKAGCVD GNTARAKRTR  180
SKAFVEHEVV TNGEPENDDG LAEGGDSFDK LPSENPDKIM ENENGGKESE EDGAVTNNMG  240
NETGGKEGEE EGAVTKGKPE NNLLSVNADD KRVEKESSEK GSEEDGAADE LCALQDALET  300
TVFQHLGSYA QKQMLEKLKT LRAKERKELS GEWKSLLVEE ALFKSKKYSF TAKLANAAFH  360
N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0133s0118.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641576.10.0GLABROUS1 enhancer-binding protein-like 1
TrEMBLD7L7078e-66D7L707_ARALL; Uncharacterized protein
STRINGCagra.0133s0118.1.p0.0(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.12e-23DNA-binding storekeeper protein-related transcriptional regulator