PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0133s0118.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GeBP | ||||||||
Protein Properties | Length: 364aa MW: 40161.7 Da PI: 4.9324 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 94 | 1.6e-29 | 73 | 163 | 3 | 98 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 ++rlw++ De+v+L+G+++++++tg++ +d af+e++k+ i++k+sk+qlv+Ki++LK Kf+++ k +psf++++d+++f+ls Cagra.0133s0118.1.p 73 SKRLWTKADELVILKGIVNYQKDTGVDNLSDSAAFFEYIKDDIDAKFSKDQLVNKIKKLKFKFRDNLVK-----KPSFANSQDSETFDLS 157 79***************************************************************9999.....9*************** PP DUF573 93 kkiWgs 98 + iWg+ Cagra.0133s0118.1.p 158 MAIWGK 163 ****95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.2E-23 | 74 | 162 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MVNKKRLCSG DGFSETYTCD LEFRLNNSNG FLPPSPPDSP VLNSPDNLDS SNATLLKTRK 60 KRKATLPSYA PDSKRLWTKA DELVILKGIV NYQKDTGVDN LSDSAAFFEY IKDDIDAKFS 120 KDQLVNKIKK LKFKFRDNLV KKPSFANSQD SETFDLSMAI WGKDKAGCVD GNTARAKRTR 180 SKVQAFVEHE VVTNGEPEND DGLAEGGDSF DKLPSENPDK IMENENGGKE SEEDGAVTNN 240 MGNETGGKEG EEEGAVTKGK PENNLLSVNA DDKRVEKESS EKGSEEDGAA DELCALQDAL 300 ETTVFQHLGS YAQKQMLEKL KTLRAKERKE LSGEWKSLLV EEALFKSKKY SFTAKLANAA 360 FHN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0133s0118.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023641576.1 | 0.0 | GLABROUS1 enhancer-binding protein-like 1 | ||||
TrEMBL | D7L707 | 3e-67 | D7L707_ARALL; Uncharacterized protein | ||||
STRING | Cagra.0133s0118.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17435 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36340.1 | 2e-23 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0133s0118.1.p |