PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0133s0112.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | CO-like | ||||||||
Protein Properties | Length: 375aa MW: 40837.3 Da PI: 6.4044 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.2 | 1.2e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ +C+++ +lC +C + H+ H++ Cagra.0133s0112.1.p 4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSAnalskrHSR 44 6*****************************65677777776 PP | |||||||
2 | zf-B_box | 21.8 | 4e-07 | 46 | 95 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg................H 37 +C++++ ++++ C + + lC++C ++H++ H Cagra.0133s0112.1.p 46 LICERCNAQPASVRCVEERLSLCQNCDWSGHNSsnnnssstsssssppqH 95 68*****************************7655555555555555555 PP | |||||||
3 | CCT | 60.4 | 6.2e-21 | 317 | 360 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ Cagra.0133s0112.1.p 317 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAG 360 99***************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.897 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.30E-8 | 4 | 47 | No hit | No description |
SMART | SM00336 | 2.5E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.859 | 43 | 87 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.54E-6 | 47 | 76 | No hit | No description |
Pfam | PF06203 | 1.0E-15 | 317 | 359 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.338 | 317 | 359 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLICER CNAQPASVRC 60 VEERLSLCQN CDWSGHNSSN NNSSSTSSSS SPPQHKRQTI SCYSGCPSSS ELASIWSFCL 120 DLAGQSICEQ ELGLMNIDDN VPTTDKICIE DKKHVLPGSS SVPETSSAAQ GTSSFAKKDV 180 GVCEDDFYGN LGMDEVDLAL ENYEELFGVA FNPSEELFGH GGIDSLFQKH QTAPEGGNSV 240 QPACSNDSFM SSKTEPIICF ASKPAHSNIS FSGVTGESSA GDFQECGASS SMQLSGEPPW 300 YPPASQDNNA CSHSVTRNNA VMRYKEKKKA RKFDKRVRYA SRKARADVRR RVKGRFVKAG 360 EAYDYDPLTP TRSY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0133s0112.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK316934 | 0.0 | AK316934.1 Arabidopsis thaliana AT3G07650 mRNA, complete cds, clone: RAFL14-22-K23. | |||
GenBank | BT029490 | 0.0 | BT029490.1 Arabidopsis thaliana At3g07650 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006296715.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_023642594.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9SSE5 | 0.0 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | R0HZV4 | 0.0 | R0HZV4_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0133s0112.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1682 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 0.0 | CONSTANS-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0133s0112.1.p |